DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rpn13R and adrm1

DIOPT Version :9

Sequence 1:NP_572205.1 Gene:Rpn13R / 31433 FlyBaseID:FBgn0029745 Length:324 Species:Drosophila melanogaster
Sequence 2:NP_989049.1 Gene:adrm1 / 394646 XenbaseID:XB-GENE-489445 Length:404 Species:Xenopus tropicalis


Alignment Length:375 Identity:113/375 - (30%)
Similarity:167/375 - (44%) Gaps:75/375 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 SNAHNLVEYKAGRMVLLGKMVEPDDRKGLLFVRRSADDNQLHIHWMDRRSGSVELDIVATPGVLE 68
            |::..|||::||:|.|.|..|.||.||||:::::: ||:.:|..|.||.|||||.|::..|...|
 Frog    17 SSSKYLVEFRAGKMSLKGSTVTPDKRKGLVYIQQT-DDSLIHFCWKDRTSGSVEDDLIIFPDDCE 80

  Fly    69 FRRIDQCKTGRVYVLKYTRSTQRYFFWMQELQADGDALFCQRVNELI------------ASGERQ 121
            |:|:.||.||||||||:...::|.||||||.:.|.|..:|::|||.:            .||..:
 Frog    81 FKRVSQCTTGRVYVLKFKAGSKRLFFWMQEPKTDKDEEYCRKVNEYLNNPPMPGALGGSGSGGHE 145

  Fly   122 RDEIAAAEGDMDT---DADHT--------TARRGFGG---------------------------- 147
            ...: ..||.:.:   :..|.        |...|.||                            
 Frog   146 LSAL-GGEGGLQSLLGNMSHNQLMQLIGPTGLGGLGGLGALTGPGLASLLGSGGPTTSSSSSSSR 209

  Fly   148 SENPQILEEMLV-ETQATWLPANR------------SLNHWQTGDAMEEPPLPFADPDANTDTDT 199
            |::..:...... .|:.|..||..            |.|...:.......|:..:|......|..
 Frog   210 SQSAAVTPSSTTSSTRTTSAPAAPAAAPATTPSPAVSSNDGASAATSPTQPIQLSDLQNILATMN 274

  Fly   200 DTYTSESGIQTFDLAAVLRLHGAEAVDKVLSCPSRREKLMAQLPKDHEAMDEQSDILEHLHSAQF 264
            ...|.|.| |..|||:||.   .|.:..:|:....:|:||..||..........:|...|.|.||
 Frog   275 VPATGEGG-QQVDLASVLT---PEIMAPILANAEVQERLMPYLPSGESLPQTADEIQNTLTSPQF 335

  Fly   265 YESLSSFSVGLHSGALRKSLEPLL-QSDDNREALNAAQVGDVERFLRELE 313
            .::||.||..|.||    .|.||: |.....:|::||..||:|.|.:.::
 Frog   336 QQALSMFSAALASG----QLGPLMSQFGLPADAVDAANKGDIEAFAKAMQ 381

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpn13RNP_572205.1 PH_Rpn13 10..115 CDD:270124 53/104 (51%)
RPN13_C 204..312 CDD:293158 38/108 (35%)
adrm1NP_989049.1 PH_Rpn13 23..127 CDD:270124 53/104 (51%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 195..258 7/62 (11%)
RPN13_C 273..380 CDD:374621 39/114 (34%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 377..404 0/5 (0%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1479349at2759
OrthoFinder 1 1.000 - - FOG0003818
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR12225
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X2662
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
55.020

Return to query results.
Submit another query.