DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpn13R and Rpn13

DIOPT Version :10

Sequence 1:NP_572205.1 Gene:Rpn13R / 31433 FlyBaseID:FBgn0029745 Length:324 Species:Drosophila melanogaster
Sequence 2:NP_001137662.1 Gene:Rpn13 / 36545 FlyBaseID:FBgn0033886 Length:424 Species:Drosophila melanogaster


Alignment Length:375 Identity:119/375 - (31%)
Similarity:185/375 - (49%) Gaps:66/375 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 AQSNAHNLVEYKAGRMVLLGKMVEPDDRKGLLFVRRSADDNQLHIHWMDRRSGSVELDIVATPGV 66
            :.||:.||||::||||.::||||.||.||||:::.:| ||..:|..|.||.||.||.|::..|..
  Fly    10 SSSNSSNLVEFRAGRMNMVGKMVHPDPRKGLVYMTQS-DDGLMHFCWKDRTSGKVEDDLIVFPDD 73

  Fly    67 LEFRRIDQCKTGRVYVLKYTRSTQRYFFWMQELQADGDALFCQRVNELIAS--GERQRDEIAAAE 129
            .|::|:||||||||||||:..||:|.||||||.:.|.|...|:|:|||:.:  ...||....:.:
  Fly    74 FEYKRVDQCKTGRVYVLKFKSSTRRMFFWMQEPKTDKDDEQCRRINELLNNPPSAHQRGGGGSND 138

  Fly   130 GDMD----------------------------------TDADHTTARRGFGGSENPQILEEMLV- 159
            ||:.                                  |.:...|:..|.||:...|..|.:.| 
  Fly   139 GDLQYMLNNMSQQQLMQLFGGVGQMGGLSSLLGQMNSRTPSSRNTSSSGGGGASALQTPENVSVP 203

  Fly   160 ETQATWLPANRSLNHWQTGDAMEEPPLPFADPDA---NTDTDTDTYTSESGIQTFDLAAVL---- 217
            .|.:....:..|.:.......:.|......|.||   |:.|.|.|.:..:|.......|.|    
  Fly   204 RTPSAPSKSGSSRSSSNVNSQVGEGAGSSVDADAPGKNSTTSTTTASKSTGAYANPFQAYLSNLS 268

  Fly   218 ---------------RLHGAEAVDKVLSCPSRREKLMAQLPKDHEAMDE-QSDILEHLHSAQFYE 266
                           .|.||:|::::::.|...:.|:..||:..:..|: :..|.:::.|.||.:
  Fly   269 PEHGAGRSLNIDLSTALPGADAINQIIADPEHVKTLIVHLPESEDVDDDRKQQIKDNITSPQFQQ 333

  Fly   267 SLSSFSVGLHSGALRKSLEPLL-QSDDNREALNAAQVGDVERFLRELERN 315
            :|:.||..|.|.    .|.|:: |.:.:.||:.||..|::|.|:|.||::
  Fly   334 ALAQFSSALQSA----QLGPVIKQFELSNEAVAAAFSGNLEDFVRALEKS 379

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpn13RNP_572205.1 PH_Rpn13 10..115 CDD:270124 58/104 (56%)
RPN13_C 209..312 CDD:465170 31/123 (25%)
Rpn13NP_001137662.1 PH_Rpn13 18..122 CDD:270124 58/104 (56%)
RPN13_C 267..376 CDD:465170 29/112 (26%)

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