DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpn13R and C56G2.9

DIOPT Version :9

Sequence 1:NP_572205.1 Gene:Rpn13R / 31433 FlyBaseID:FBgn0029745 Length:324 Species:Drosophila melanogaster
Sequence 2:NP_741189.2 Gene:C56G2.9 / 266886 WormBaseID:WBGene00016982 Length:176 Species:Caenorhabditis elegans


Alignment Length:87 Identity:18/87 - (20%)
Similarity:30/87 - (34%) Gaps:25/87 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   229 LSCPSRREKLMAQLPKDHEAMDE------------QSDILEHLHSAQFYESLSSFSVGLHSGALR 281
            |...:|..||..|...|.:.|.|            :||           :..|:.|:.:..|.:.
 Worm    26 LDAKTRDLKLSDQAKNDKKYMSEMETKNPKRKSIKKSD-----------QKPSTMSLNVGKGGVE 79

  Fly   282 KSLEPLLQSDDNREALNAAQVG 303
            |..|.:  |.....:|.:..:|
 Worm    80 KEKETI--SSQRSNSLESPGLG 99

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpn13RNP_572205.1 PH_Rpn13 10..115 CDD:270124
RPN13_C 204..312 CDD:293158 18/87 (21%)
C56G2.9NP_741189.2 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3037
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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