DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpn13R and rpn1302

DIOPT Version :10

Sequence 1:NP_572205.1 Gene:Rpn13R / 31433 FlyBaseID:FBgn0029745 Length:324 Species:Drosophila melanogaster
Sequence 2:NP_588003.1 Gene:rpn1302 / 2539182 PomBaseID:SPCC16A11.16C Length:388 Species:Schizosaccharomyces pombe


Alignment Length:397 Identity:96/397 - (24%)
Similarity:156/397 - (39%) Gaps:104/397 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 AQSNAHNLVEYKAGRMVLL--GKMVEPDDRKGLLFVRRSADDNQLHIHWMDRR--SGSVELDIVA 62
            ::...:.||..|||::...  ..:::.|.|||:::: :.|.|..||.:|.:|.  |..||.|.:.
pombe    13 SERGKYGLVSVKAGKLQRKPGTNILQADHRKGVIYM-QMASDELLHFYWKERARVSREVEDDYII 76

  Fly    63 TPGVLEFRRIDQCKTGRVYVLKYTRSTQRYFFWMQELQADGDALFCQRVNELIASGERQRDEIAA 127
            .|...||.:||:|.|||||.||:..|:|.:|:||||...:.|......:|:|||........|  
pombe    77 FPEEAEFIKIDECTTGRVYALKFKSSSQIHFYWMQEYSDEKDKETASLINQLIADPVNTTRTI-- 139

  Fly   128 AEGDMDTDADHTTARRGFGGSENPQILE---------------EMLVETQATWLPA--------N 169
                   ::.:.::.||...|...|:|:               |:|..|...  ||        |
pombe   140 -------NSHNNSSSRGTDDSSTSQLLQLFGAASQDALQDFNWEVLSPTAEA--PAILPRFPNVN 195

  Fly   170 RSLN-------------HWQTGDAMEEPPLPFADP-DANTDTDTDTYTSESGIQTFDLAAVLRLH 220
            .|.|             |...|:..|:.....|.| |.|.|     ||....::..:....|.|:
pombe   196 ESANMYRASSESNLNGPHATAGENGEDHEEATASPLDENID-----YTHSRTLELLEQLQPLILN 255

  Fly   221 GAEAVD---------KVLSCPSRREKLMAQLPKDHEAMDEQSDILEHLHSAQFYESLSSFSVGL- 275
            ....|:         :|::.|....|:....|.|...:..::::.|   :..|::.|||....: 
pombe   256 ETTFVEPFSIDRESHRVITHPRVYPKIFPHSPSDLLRISGRAELSE---NRDFFKHLSSLMEAVA 317

  Fly   276 --HSGALRK----SLEPLLQSDDNREALNA-------------------------AQVGDVERFL 309
              .|.:||:    |||.:..:......|:|                         .:.||||  :
pombe   318 KPESESLREICNLSLEQVQSASGAELFLHALYDRLVNEGVIVISHITQEGSDGEVEEEGDVE--M 380

  Fly   310 RELERND 316
            ||....|
pombe   381 RESNEKD 387

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpn13RNP_572205.1 PH_Rpn13 10..115 CDD:270124 40/108 (37%)
RPN13_C 209..312 CDD:465170 26/143 (18%)
rpn1302NP_588003.1 PH_Rpn13 21..129 CDD:270124 40/108 (37%)

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