DRSC/TRiP Functional Genomics Resources

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Protein Alignment ovo and lin-48

DIOPT Version :10

Sequence 1:NP_726971.1 Gene:ovo / 31429 FlyBaseID:FBgn0003028 Length:1351 Species:Drosophila melanogaster
Sequence 2:NP_497759.1 Gene:lin-48 / 175485 WormBaseID:WBGene00003033 Length:280 Species:Caenorhabditis elegans


Alignment Length:304 Identity:132/304 - (43%)
Similarity:160/304 - (52%) Gaps:78/304 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly  1025 SSSSSSGGTNSSNSSGGSSNSPL----LDANAAAAAAAALLDTKPLIQSLGLPPDLQLEFVNGGH 1085
            ::|.|...||||.....:|...|    ||.:.:..|:......|..|.|..:.|  .:||||||:
 Worm    31 NTSISRSSTNSSKPEEKNSKKFLIERFLDDDPSPPASILSPSPKAAIPSPIINP--AVEFVNGGY 93

  Fly  1086 GIKNPLAVENAHGGHHRIRNIDCIDDLSKHGHHSQHQQQQGSPQQQNMQQSVQQQSVQQQQSLQQ 1150
            |:|||||                                       .:..|.:..|:.       
 Worm    94 GVKNPLA---------------------------------------PLISSFETTSIP------- 112

  Fly  1151 QQQQQHHQHHSNSSASSNASSHGSAEALCMGSSGGANEDSSSGNNKFVCRVCMKTFSLQRLLNRH 1215
                     .|..|.||           .:.||....:||      ..|.:|.|.|.||||||||
 Worm   113 ---------CSTVSPSS-----------LISSSKDEFQDS------LTCHICGKKFGLQRLLNRH 151

  Fly  1216 MKCHSDIKRYLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCNLCEKSFTQRCSLESHCQKVHSVQH 1280
            :|||||:|||||||||||||||||||||||||||||||||..||||||||||||||.:|||.|.|
 Worm   152 IKCHSDLKRYLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCEQCEKSFTQRCSLESHLRKVHGVTH 216

  Fly  1281 QYAYKERRAKMYVCEECGHTTCEPEVHYLHLKNNHPFSPALLKF 1324
            ||||||||:|::|||:||:|..:.||:..|:|..||||.|.|:|
 Worm   217 QYAYKERRSKVFVCEDCGYTDEKFEVYLSHIKVVHPFSAAYLRF 260

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ovoNP_726971.1 C2H2 Zn finger 1199..1219 CDD:275368 13/19 (68%)
zf-H2C2_2 1212..1235 CDD:463886 20/22 (91%)
C2H2 Zn finger 1227..1247 CDD:275368 19/19 (100%)
zf-H2C2_2 1239..1264 CDD:463886 22/24 (92%)
C2H2 Zn finger 1255..1276 CDD:275368 16/20 (80%)
lin-48NP_497759.1 C2H2 Zn finger 135..155 CDD:275368 13/19 (68%)
C2H2 Zn finger 163..183 CDD:275368 19/19 (100%)
zf-H2C2_2 175..200 CDD:463886 22/24 (92%)
C2H2 Zn finger 191..209 CDD:275368 15/17 (88%)

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