DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ptp4E and ptpro

DIOPT Version :9

Sequence 1:NP_001162669.1 Gene:Ptp4E / 31425 FlyBaseID:FBgn0004368 Length:1767 Species:Drosophila melanogaster
Sequence 2:NP_001077283.1 Gene:ptpro / 407676 ZFINID:ZDB-GENE-070424-54 Length:1238 Species:Danio rerio


Alignment Length:1362 Identity:346/1362 - (25%)
Similarity:563/1362 - (41%) Gaps:344/1362 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   437 VRSLGGF-------------LDD-------RSNALHISWEPAETGRQDSYRISYHEQTNASEVPA 481
            ::|..||             |||       ...|:.:|.||.      ::.:.:.:..:|..:|.
Zfish    16 IQSAAGFRVQLQDGVRMLMSLDDGDIGPGVSEYAVRVSGEPL------THTLLFQQAADAHTLPE 74

  Fly   482 P--FPVAAESQITTNLTEYTLDSLLAGRRYLIAVQALSKGVASNASDITRYT-RPAAPLIQELRS 543
            |  |..:....:      |::..:..||.:... ..:::.:..::.::..|. .|...::.::||
Zfish    75 PLLFNASYHGLL------YSISLMTDGRTHTTR-SIITQPLPLDSVEMWDYAPSPETAVVFQIRS 132

  Fly   544 IDQGLMLSWRSDVNSRQDRYEVHYQRNGTREERTMATNETSLTIHYLHPGSGYEVKVHAISHGV- 607
            .|:.:.           .|..:.|...  .:.|.|...:      :||   |..|..|.:| || 
Zfish   133 PDRNIF-----------TRVNISYTEG--HQRRYMLYKD------FLH---GKTVFKHWLS-GVC 174

  Fly   608 ---------------------RSE----PHSYFQAVFPKPPQNLTLQTVHTNLVVLHWQAPEGSD 647
                                 ||:    |..:  ...|.||.|::|:.:|     |..:.|.|..
Zfish   175 YSNITFQLISEASVNRSALLSRSDITHNPQQH--RTVPNPPLNVSLKILH-----LSGRGPPGPV 232

  Fly   648 FSEYVVRYRTDASPWQRISGL--HENEARIKDMHYGERYL--VQVNTVSFGVESPHPLELNVTMP 708
            .:..:::...:||..:|...|  :|.:....|....|..|  .|:|.    .||.:..|      
Zfish   233 LTGAILKNSHNASVVRRERDLPEYEEQEPTSDTLNTESNLTHTQLNQ----SESENESE------ 287

  Fly   709 PQPVSNVVPLVDSRNLTLEWPRPDGHVDFYTLKWWPTDEEDRVEFKN--VTQLEDLSSP--SVRI 769
            .:||: ..|.::|...:| |.       :.|:...||:||:. .|.|  |.:.||.:.|  ::.|
Zfish   288 SEPVT-AEPTLNSSTQSL-WA-------WQTVSPAPTEEEEE-GFVNALVPEYEDSNEPGSALGI 342

  Fly   770 PIEDL----------------------SPGRQY-RFEVQASSNGIRSGTTHLSTRT----MPLIQ 807
            |:|..                      :|...| .|.:....||..:.|..:...|    ..|.:
Zfish   343 PLEPAVMPAVMPTPLAPVLLQLRWSPPAPHTAYDAFNIYIYRNGNSTETATVDENTHEFLAELSE 407

  Fly   808 SDVF------IANAGH-----------------------EQGQD------------ETITLSYTP 831
            |..:      :::||.                       ||.|:            .|..:|:.|
Zfish   408 SGTYRIHVTTLSSAGDCEARESSANTAFTFYLSPSGEWMEQPQERPQAVSVKMLDSSTAAVSWAP 472

  Fly   832 T--PADSTRFDIYRFSMGDPTIKDKEKLANDTERKLS---FSGLTPGKLYNVTVWTVSGGV---A 888
            :  ..:.:...:...:...|:|..:.:|...:|..::   .|.||||..|.|.|:..:|.:   |
Zfish   473 STHTYNGSLISVQSLTCLRPSISQRMELNYCSEENITSDIISSLTPGAQYRVVVYHTNGPLVSPA 537

  Fly   889 SLPVQRLYRLHPLPISDLKAIQVAAREITLHWTAPAGEYTDFELQYLSADEEAPQLLQNVTKNTE 953
            |.||  :..:.|..:.||....::...:.|.|..|   |.....:|         :||....|:.
Zfish   538 SEPV--IIDIEPTGVRDLVVYPLSPSAVILSWQRP---YNVAFRKY---------VLQTFFFNSA 588

  Fly   954 ITLQGLRPYHNYTFTVVVRSGSIQGTD-----FADVSVSTLMRSSAPIS----ASYQTLTAPPGK 1009
            ........|:....|..| ..|::.||     |.:..|:.:.....|:|    ::...:|||  :
Zfish   589 TQTAQWSTYYEIAATASV-IASVRVTDLLPAWFYNFRVTMVTWGDPPLSCCDTSTVSFITAP--E 650

  Fly  1010 VDYFQPSDVQPGEVTFEWS---LEPAEQHGPIDYFRITCQNADDAADVSSYEFPVNATQGKID-- 1069
            ..:....:...|.|...|:   |.....|..:.::::..:....|    ...|.|:.|:..:.  
Zfish   651 APHISSVEFSHGSVFVRWTYGDLFTDLTHSRMLHWQVVAEGKKSA----RRRFSVDVTRSVMKAS 711

  Fly  1070 -GLVPGNHYIFRIQAKSALGYGAEREHIQTMPILAPPVPEPSVTPLEVSRTSSTIEISFRQGYFS 1133
             .|..|:.|...:.|.:.........||..:    .|.|..|:..:..|.||.|:        ..
Zfish   712 LALPAGDIYNLTVTACTERSCNTSAPHIMKL----DPAPPRSLYAVNASDTSVTL--------IW 764

  Fly  1134 NAHGMVRSYTIIIAEDVGKNASGLEMPSWQDVQAYTVWLPYQAIEPYNPFLTSNGSRKSSLEAEH 1198
            ...|:|..| :|....:|.:|...::                    ..|.:||         |..
Zfish   765 AEEGVVDHY-LITCRALGAHAEQKKV--------------------REPLVTS---------AHV 799

  Fly  1199 FTIGTANCDKHQAGYCNGPLRAGTTYRIKIRAFTDEDKFTDTVYSSPITTER----SDTVIVAAT 1259
            .|:              ..|:|.|||...:|: :.....:|.|:.:..||.|    |...|.|..
Zfish   800 LTV--------------SGLQASTTYNCSVRS-SSYSSSSDPVHITVSTTVREMNPSVAAISALA 849

  Fly  1260 VSAVLLVAMV---LVVVYCQHRCQLIRRAS-----KLARMQDE--------------LAALPE-- 1300
            |.:|||::::   |:|:..:| .:|.|...     ..|..:.:              |..||.  
Zfish   850 VLSVLLISLLVLFLLVLRKKH-MELSRECGAETFVNFASFERDGKLPYNWRRSLFAFLTLLPSCL 913

  Fly  1301 -------GYITP-----------NRPVHVKDFSEHYRIMSADSDFRFSEEFEELKHVGRDQACSF 1347
                   .||.|           ..||.:.||..:.:.|..||.::||.:|||||.||.|.:...
Zfish   914 WTDYLLAFYINPWSKTALKKRKLTSPVQLSDFEAYLKDMGKDSAYKFSLQFEELKSVGLDLSHEA 978

  Fly  1348 ANLPCNRPKNRFTNILPYDHSRFKLQPVDDDDGSDYINANYMPGHNSPREFIVTQGPLHSTREEF 1412
            |:||.||||||:|||||||.||.||..:.:|:|||||||||:||:|||||:|.|||||..||.:|
Zfish   979 ADLPINRPKNRYTNILPYDFSRVKLISLHNDEGSDYINANYIPGYNSPREYIATQGPLPDTRNDF 1043

  Fly  1413 WRMCWESNSRAIVMLTRCFEKGREKCDQYWPVDRVAMFYGDIKVQLIIDTHYHDWSISEFMVSRN 1477
            |:|..:.....|||||:|.|:.|.|||.|||.....:.||:|.|:::.:|...:|:|..|.::..
Zfish  1044 WKMVLQQKVHIIVMLTQCNERRRVKCDHYWPFSDEPVAYGEISVEMLAETDSPEWTIRSFRLAYA 1108

  Fly  1478 CESRIMRHFHFTTWPDFGVP--EPPQSLVRFVRAFRDVIGTDMRPIIVHCSAGVGRSGTFIALDR 1540
            .|::.:.||::|:|||.|||  ...:|:::||:..|..:.....||:|||||||||:||||:|||
Zfish  1109 DETQDVLHFNYTSWPDHGVPTVNAIESILQFVQIVRQQVNRSKGPIVVHCSAGVGRTGTFISLDR 1173

  Fly  1541 ILQHIHKSDYVDIFGIVFAMRKERVFMVQTEQQYVCIHQCLLAVLEGKEHLLADSLELHAND 1602
            ::|||.:.:|||:.|:|..||..|:.|||||:|||.||||:|.:.:.|:.      :.|.:|
Zfish  1174 LMQHIQEHEYVDVLGLVSDMRSHRLSMVQTEEQYVFIHQCVLLMWKKKKQ------QSHTSD 1229

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ptp4ENP_001162669.1 FN3 151..242 CDD:238020
fn3 247..328 CDD:278470
fn3 343..417 CDD:278470
fn3 443..525 CDD:278470 15/103 (15%)
FN3 548..611 CDD:238020 14/88 (16%)
FN3 620..706 CDD:238020 22/89 (25%)
fn3 708..796 CDD:278470 25/114 (22%)
fn3 824..886 CDD:278470 15/66 (23%)
fn3 902..978 CDD:278470 14/75 (19%)
fn3 1013..1092 CDD:278470 13/84 (15%)
UP_III_II 1106..>1248 CDD:297589 25/141 (18%)
PTPc 1329..1582 CDD:214550 135/254 (53%)
PTPc 1355..1582 CDD:238006 120/228 (53%)
ptproNP_001077283.1 fn3 362..423 CDD:278470 10/60 (17%)
FN3 453..543 CDD:238020 20/91 (22%)
FN3 547..647 CDD:238020 21/112 (19%)
FN3 744..812 CDD:214495 22/119 (18%)
PTPc 959..1215 CDD:214550 135/255 (53%)
PTPc 986..1215 CDD:238006 120/228 (53%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D16347at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.010

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