DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ptp4E and PTP-ER

DIOPT Version :9

Sequence 1:NP_001162669.1 Gene:Ptp4E / 31425 FlyBaseID:FBgn0004368 Length:1767 Species:Drosophila melanogaster
Sequence 2:NP_726092.1 Gene:PTP-ER / 37461 FlyBaseID:FBgn0016641 Length:1377 Species:Drosophila melanogaster


Alignment Length:1723 Identity:311/1723 - (18%)
Similarity:506/1723 - (29%) Gaps:716/1723 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly   193 PFERSYSLEGN---------ETLQLSAKELTP----GGSYQVQAYSVYQGKESVAYTSRNFTTKP 244
            |.|.....|.|         |.||.|.:..:|    ||.  |..:..::.:|...:|.|.||.  
  Fly    34 PLEAGEDAESNKSTPYFTPLEYLQTSFEFPSPTVEVGGG--VPGFPEHEDQEEEVFTPRQFTI-- 94

  Fly   245 NTPGKFIVWFRNETTLLVLWQPPFPAGIYTHYRVSITP--DDAIQSVLYVEREGEPPGPAQAAFK 307
                                ..|.||....|...|.:|  ....:.:...:|....|....::.:
  Fly    95 --------------------TSPHPAAHVHHPSSSQSPTLGRKFKRLSQYDRRSCSPHINTSSGE 139

  Fly   308 GLVPGR---EYNISVQ--TVSEDETSSVPTTARYLTVPE-RVLNVTF-DEAYTTS--SSFRVRWE 363
            ..|.||   :.|...:  :|.:|..:|:     ||:..| ....:.| ||:.||.  .:.|:.:.
  Fly   140 ERVSGRGIDKENTMPKGGSVDQDLENSL-----YLSKSEHNSPTILFKDESSTTPGLEASRLSYS 199

  Fly   364 PPRTYSEFDAYQVMLSTSRRIFNVPRAANGDSVYFDYPDILEPGRTYEVVVKTIADNVNSWPASG 428
             |:..|..:...|. .:...|.|.....||:  :|.:|:|      ..||.....|.|    ...
  Fly   200 -PKLLSSINNLNVS-GSPLNIINSAGYKNGN--FFRFPEI------DHVVQDAPMDTV----CLE 250

  Fly   429 EVTLRPRPVRSLGGFLDDRSNALHISWEPAETGRQDSYRISYHEQTNASEVPAPFPVAAESQITT 493
            |.|.|            |||.||.   ||.|..:|.|......:..|              .:|.
  Fly   251 EATRR------------DRSPALA---EPPEQQQQKSEGRKNRKNKN--------------NLTI 286

  Fly   494 NLTEYTLDSLLAGRRYLIAVQALSKGVASNASDITRYTRPAAPLI----QELRSIDQGLMLSWRS 554
            .:|:..:                     .|:|..:...:|..|.|    ::.||:|.        
  Fly   287 RITDVPI---------------------KNSSQPSPLPKPKTPTIKSTKEKARSLDS-------- 322

  Fly   555 DVNSRQDRYEVHYQRNGTREERTMATNETSLTIHYLHPGSGYEVKVHAI--SHGV-------RSE 610
                                    |.||:.|:|           .||.|  |||.       :|:
  Fly   323 ------------------------AANESELSI-----------VVHNITESHGSCDDMETGQSQ 352

  Fly   611 PHSYFQAVFPKPPQNLTLQTVHTNLVVLHWQAPEGSDFSEYVVRYRTDAS-------PWQRISGL 668
            |               :...:|.:   ||.|.|..:..|..:.|..:..|       |.::..|:
  Fly   353 P---------------STSVIHHH---LHLQQPASAIHSTSLSRLDSHLSLANQRRTPRRKSPGI 399

  Fly   669 H----------ENEARIKDMHYGERYLVQVN-----TVSFG---------VESPHPLELNVTMPP 709
            :          :|..:::..|........::     |.|.|         |:......:..::.|
  Fly   400 NTTDWLMYHRKQNPYQVQPTHCSSTTQSSLDSDASLTPSLGDFELKSACSVDGGSKFGIGASLAP 464

  Fly   710 QPVSNVVPLVDSRNLTLE-WPRPDGHVDFYTLKWWPTDEEDRVEFKNVTQLEDLSSPSVRIPIED 773
            :.......|:.|.:..|: .|.....|:|.:....|.:.    .||..:.  ||..|:::     
  Fly   465 RSAHKHNQLLHSSSTNLKTLPECLTLVEFSSSGGGPKES----PFKQKSM--DLPMPTLQ----- 518

  Fly   774 LSPGRQYRFEVQASSNGIRSGTTHLSTRTMPLIQSDVFIANAGHEQGQDETITLSYTPTPADSTR 838
                                ..|.:||.:|.|:|          .:|.:.::||:.         
  Fly   519 --------------------AKTTVSTSSMNLLQ----------RRGSNHSLTLNL--------- 544

  Fly   839 FDIYRFSMGDPTIKDKEKLANDTERKLSFSGLTPGKLYN-VTVWTVSGGVASLPVQRLYRLHPLP 902
                           .....|.....||.|..:.|.:.| .:...:..|.||     ..|...||
  Fly   545 ---------------HSSCGNLMNSGLSHSNYSLGSILNSKSSCNLDAGTAS-----QIRADQLP 589

  Fly   903 ISDLKAIQVAARE-----------ITL---HWTAPAGEYTDFELQYLSADEEAPQLLQNVTKNTE 953
            .|.|......:|:           |||   |.|...|:..  .:|.|    :..|.:.:..|...
  Fly   590 QSHLLGSSQGSRQGLFRRRGSNHSITLKTGHTTTSCGDLN--SMQQL----QQQQAMLSAEKYNR 648

  Fly   954 ITLQGLRPYHNYTFTVVVRSGSIQGTDFADVSVSTLMRSSAPISASYQTLTAPPGKV------DY 1012
            :.::          |....|||..|:     :|.|..|.......|.|:||...|.:      ..
  Fly   649 LNMR----------TNSTGSGSGSGS-----NVPTPKRGLLERRGSNQSLTLNMGSILGGAAGTE 698

  Fly  1013 FQPSDVQPGEVTFEWSLEPAEQHGPIDYFRITCQNADDAADVSSYEFPVNATQGKIDGLVPGNHY 1077
            .|.:|:...:||. .|...|.| .|......:.:|. :::..:|.:|......|....|.| |..
  Fly   699 IQMTDIVQPKVTV-CSCAAANQ-APHQRKFFSTENL-NSSKANSQKFFGQVCFGSASDLQP-NPQ 759

  Fly  1078 IFRIQAKSALG-----YGAEREHIQTMPILAPPVPEPSVTPLEVSRTSSTIEISFRQGYFSNAHG 1137
            ...::...|:|     .|..| :|.|.|:      .|..|..|.....::|::........|...
  Fly   760 QDSVREDQAIGATCTCAGTVR-NIMTRPL------SPQTTSEEFKIYLASIQMLQSASNPLNQFD 817

  Fly  1138 MVR-SYTIIIAEDVGKNASGLEMPSWQDVQAYTVWLPYQAIEPYNPFLTSNGSRKSSLEAEHFTI 1201
            ::| :|....:....:|.  :|.|                     |.|.||.             
  Fly   818 LIRLNYVFDHSYQTNRNI--IEQP---------------------PVLGSNA------------- 846

  Fly  1202 GTANCDKHQAGYCNGPLRAGTTYRIKIRAFTDEDKFTDTVYSSPITTERSDTVIVAATVSAVLLV 1266
                                          .|.:..||.|   |.::|.|:.:....||      
  Fly   847 ------------------------------RDVETPTDMV---PPSSEDSELLASYQTV------ 872

  Fly  1267 AMVLVVVYCQHRCQLIRRASKLARMQDELAALPEGYITPNRPVHVKDFSEHYRIMSADSDFRFSE 1331
                                 ::||...:..|.|                               
  Fly   873 ---------------------VSRMAQPIPELKE------------------------------- 885

  Fly  1332 EFEELKHVGRDQACSFANLPCN----------RPKNRFTNILPYDHSRFKLQ------------- 1373
              .|.|.:.||....|.:||.|          :.|||:..|||.::||..|:             
  Fly   886 --NEQKRIFRDLHKEFWDLPLNHQEKPMVFGSQTKNRYKTILPNENSRVLLESESSELTSLLGEI 948

  Fly  1374 ----PVDDDDGSDYINANYMPGHNSPRE-FIVTQGPLHSTREEFWRMCWESNSR----------- 1422
                .|...:...||||||:.|.:...: ::.|||||.:|..|||.|.:::..|           
  Fly   949 KRTSSVTASEDLPYINANYIKGPDYVSKCYVATQGPLPNTIFEFWLMIYQNTQRYIRRCVDGGSS 1013

  Fly  1423 ----------------AIVMLTRCFEKGREKCDQYWPVDRVAMF-----------------YGD- 1453
                            .|||||...|..|:||..|:|::...:|                 |.| 
  Fly  1014 SSPHVDREQILQQYFQKIVMLTNFTEANRQKCAVYFPIELNEIFAVAAKCEVFQLSAAARDYFDR 1078

  Fly  1454 ------IKVQLIIDTHYHDWSIS-------------------------EFMVSRNCESRIMR--- 1484
                  :...::..:...|:.||                         .|.:.:|.  .|:|   
  Fly  1079 YLTPTFVPDTVVASSDAIDYEISGRHIGVESVKVTLEGDLLEALPAQGSFFLIKNV--GIVRRNG 1141

  Fly  1485 ----------------------------HFHFTTWPDFGVPEPPQSLV----------------- 1504
                                        |:.:..|||...|....:|:                 
  Fly  1142 YSVRKLVLLYCIRVPQSASYHLQKIYCYHYWYPDWPDHHSPRDINTLLDTCLHVLNLGKCESEFD 1206

  Fly  1505 ---------------RFVRAFRDVIGTDMRPI-IVHCSAGVGRSGTFIAL--------------- 1538
                           :.:..::..|...::|: ::|||||:||:|.|.|:               
  Fly  1207 IYDDTRSERNAHLAAQRLEIYQQDIFNAVQPLPVIHCSAGIGRTGCFTAILNAVRQLRQSLAYSL 1271

  Fly  1539 ------------------------------DRILQHI--HKSD------------------YVDI 1553
                                          .|.:.||  |:..                  :||:
  Fly  1272 TGMLTKSLTSSSTEEYHNPTDSDSSFTCNTIRHISHILDHRDAEAVKTPPSFDRLPKMPDIFVDV 1336

  Fly  1554 FGIVFAMRKERVFMVQTEQQYVCIHQCLLAVLE 1586
            .|||..:|.:|..|||..:||..||:.:...|:
  Fly  1337 LGIVCNLRLQRGGMVQNSEQYELIHRAICLYLK 1369

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ptp4ENP_001162669.1 FN3 151..242 CDD:238020 16/61 (26%)
fn3 247..328 CDD:278470 14/87 (16%)
fn3 343..417 CDD:278470 18/76 (24%)
fn3 443..525 CDD:278470 14/81 (17%)
FN3 548..611 CDD:238020 12/71 (17%)
FN3 620..706 CDD:238020 16/116 (14%)
fn3 708..796 CDD:278470 13/88 (15%)
fn3 824..886 CDD:278470 8/62 (13%)
fn3 902..978 CDD:278470 18/89 (20%)
fn3 1013..1092 CDD:278470 18/83 (22%)
UP_III_II 1106..>1248 CDD:297589 19/142 (13%)
PTPc 1329..1582 CDD:214550 93/485 (19%)
PTPc 1355..1582 CDD:238006 85/449 (19%)
PTP-ERNP_726092.1 Y_phosphatase 916..1364 CDD:278528 85/449 (19%)
PTPc 917..1364 CDD:238006 85/448 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45443526
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR19134
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.030

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