DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ptp4E and Ptprq

DIOPT Version :9

Sequence 1:NP_001162669.1 Gene:Ptp4E / 31425 FlyBaseID:FBgn0004368 Length:1767 Species:Drosophila melanogaster
Sequence 2:NP_075214.2 Gene:Ptprq / 360417 RGDID:620779 Length:2302 Species:Rattus norvegicus


Alignment Length:1719 Identity:445/1719 - (25%)
Similarity:705/1719 - (41%) Gaps:357/1719 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    90 RIDYSPPFGFPEPNTTIPASDI--------------GKDIKFSRALPGTEYNFWL-YYTNSTHRE 139
            |:.:|||   .:||..|.|.::              ..||..|...|.|.||..: .||...|..
  Rat   685 RLKWSPP---EKPNGIIIAYEVLYQNADTLFVKNTSTTDIIISDLKPYTLYNISIRSYTRLGHGN 746

  Fly   140 QLTWTVNITTA---PD-PPANLSVQLRSSKSAFITWRPPGS--GRYSGFRIRVLGLTDLPFERSY 198
            |.:..:::.|:   || .|.|::.:..||....|::.||.|  |....:.|.:        :||.
  Rat   747 QSSSLLSVRTSETVPDSAPENITYKNISSGEIEISFLPPRSPNGIIQKYTIYL--------KRSN 803

  Fly   199 SLEGNETLQLSAKELTPGGSYQVQAY------SVYQGKESVAYTSRNFTTKPNTPG----KFIVW 253
            |.|. .|:..::...|.||..:...|      |..:| |.:.....:..|:.:.|.    .|.|.
  Rat   804 SHEA-RTINTTSLTQTIGGLKKYTHYVIEVSASTLKG-EGIRSRPISILTEEDAPDSPPQNFSVK 866

  Fly   254 FRNETTLLVLWQPPF-PAGIYTHYRVSITPDDAIQSVLYVEREGEPPGPAQAAFKGLVPGREYNI 317
            ..:..|:::.||||. |.||..:|.|.:....:::::...|        |......|    :||:
  Rat   867 QLSGVTVMLSWQPPLEPNGIILYYTVYVWDKSSLRAINATE--------ASLVLSDL----DYNV 919

  Fly   318 ---SVQTVS------------------EDETSSVPTTARYLTVPERVLNVTFDEAYTTSSSFRVR 361
               :..|.|                  |.|.|..|....|:.:              :|||..:.
  Rat   920 DYGACVTASTRFGDGNARSSIINFRTPEGEPSDPPNDVHYVNL--------------SSSSIILF 970

  Fly   362 WEPP-------RTYSEFDAYQ----------VMLSTSRRIFNVPRAANGDSVY----FDYPDILE 405
            |.||       :.||.:  ||          .:|..::...||..:|.   :|    |.|     
  Rat   971 WTPPVKPNGIIQYYSVY--YQNTSGTFVQNFTLLQVTKESDNVTVSAR---IYRLAIFSY----- 1025

  Fly   406 PGRTYEVVVKTIADNVNSWPASGEV-------TLRPRPVRSLGGFLDDRSNALHISWEPAETGRQ 463
              .|:.:...|...|.|.   |.::       .:...||.:| .|....|.|:|:||||..   |
  Rat  1026 --YTFWLTASTSVGNGNK---SSDIIHVYTDQDIPEGPVGNL-TFESISSTAIHVSWEPPS---Q 1081

  Fly   464 DSYRISYHEQTNASEVP----APFPVAAESQIT-TNLTEYTLDSLLAGRRYLIAV-QALSKGVAS 522
            .:..:.|:...|..:.|    .|..|..|:.|. .:|.:||        .|:..: .:..||.:.
  Rat  1082 PNGLVFYYLSLNLQQSPPRHMIPPLVTYENSIDFDDLEKYT--------DYIFKITPSTEKGFSE 1138

  Fly   523 NASDITRYTR-----------PAAPLIQELRSIDQ-GLMLSWRSDVNSRQDRYEVHYQRNGTREE 575
            .      ||.           ...|:|...:::.. .::|||...:.........|....|....
  Rat  1139 T------YTTQLHIKTEEDVPDTPPIINTFKNLSSTSILLSWDPPLKPNGAILGYHLTLQGPHAN 1197

  Fly   576 RTMATNETSLTIHYLHPGSGYEVKVHAISH---GVRSEPHSYFQAVFP-KPPQNLTLQTVHTNLV 636
            .|..|:...:.:..|.|.:.|.....|.:.   |..|....|.....| .|||||||....::.|
  Rat  1198 HTFVTSGNHIVLEELSPFTLYSFFAAARTMKGLGPSSILFFYTDESAPLAPPQNLTLINYTSDFV 1262

  Fly   637 VLHWQ---APEG--SDFSEYVVRYRTDASPWQRISGLHENEARIKDMHYGERYLVQVNT---VSF 693
            .|.|.   .|.|  ..:|..:..:.||...::.|||| :.:|:::.:.....|.|.|:.   |..
  Rat  1263 WLTWSPSPLPGGIVKVYSFKIHEHETDTVFYKNISGL-QTDAKLEGLEPVSTYSVSVSAFTKVGN 1326

  Fly   694 GVESPHPLELNV-TMPPQPVSNVVPLV-DSRNLTLEWPRP---DGHVDFYTLKWWPTDEEDRVEF 753
            |.:..:.:|... ...|:.|.|:..:. |.:::::.|..|   :|.:..|.              
  Rat  1327 GNQYSNVVEFTTQESVPEAVRNIECVARDWQSVSVRWDPPRKANGIIIHYM-------------- 1377

  Fly   754 KNVTQLEDLSSPSVRIP---IEDLSPGRQYRFEVQASSNGIRSGTTH--LST--RTMPLIQSDVF 811
              :|...:.:..|.|.|   ...|.....|.|||:||::......:.  :||  .|:|...::|.
  Rat  1378 --ITVGGNSTKVSPRDPTYTFTKLLANTSYVFEVRASTSAGEGNESRCDISTLPETVPSAPTNVA 1440

  Fly   812 IANAGHEQGQDETITLSYTPTPADSTRFDIYRFSMGDPTIKDKE---------------KLANDT 861
            .:|.     |..:.||::|........|..|:.:......|.:|               ..||.|
  Rat  1441 FSNV-----QSTSATLTWTKPDTIFGYFQNYKITTQLRPQKCREWEPEECIEHQKDQYLYEANQT 1500

  Fly   862 ERKLSFSGLTPGKLY-------------NVTVWTVSGGVASLPVQRLYRLHPLPISDLKAIQVAA 913
            |.  :..||...:.|             |.:.|        :..|.|......|..::..:..:.
  Rat  1501 EE--TVHGLKKFRWYRFQVAASTNVGYSNASEW--------ISTQTLPGPPDGPPENVHVVATSP 1555

  Fly   914 REITLHWTAPA--------------GEYTDFELQYLSADEEAPQLLQNVTKNTEITLQGLRPYHN 964
            ..|.:.|:.||              .:..||.:.:|.::||        .|.|||  ..|..:..
  Rat  1556 FGINISWSEPAVITGPTFYLIDVKSVDDDDFNISFLKSNEE--------NKTTEI--NNLEVFTR 1610

  Fly   965 YTFTVVVRSGSI-----QGTDFADVSVSTLMRSSAPISASYQTLTAPPGKVDYFQ-PSDVQPGEV 1023
            |:..:....|::     .|...|:|.::||  .|.|        ..||..:.:.: |.:|...::
  Rat  1611 YSVVITAFVGNVSRAYTDGKSSAEVIITTL--ESVP--------KDPPNNMTFQKIPDEVTKFQL 1665

  Fly  1024 TFEWSLEPAEQHGPIDYFRITCQNADDAADVSSYEFPV-----NATQGKIDGLVPGNHYIFRIQA 1083
            ||   |.|::.:|.|..::......||...|..:...:     .:....::||..|:.|...:.|
  Rat  1666 TF---LPPSQPNGNIRVYQALVYREDDPTAVQIHNLSIIQKTDTSVIAMLEGLKGGHTYNISVYA 1727

  Fly  1084 KSALGYGAEREHIQTMPILAPPVPEPSVTPL-----EVSRTSSTIEISFRQGYFSNAHGMVRSYT 1143
            .::.|.|.:.:...||.|.||..|:....|:     ::..||:||.|.....|:::.||.:|:..
  Rat  1728 INSAGAGPKVQMRITMDIKAPARPKSKPIPIRDATGKLLVTSTTITIRMPICYYNDDHGPIRNVQ 1792

  Fly  1144 IIIAEDVGKNASGLEMPSWQDVQAYTVWLPYQAIEPY-------NPFLTSNGSRKSSLEAEHFTI 1201
            :::|| .|....| .:..|.|  ||     :....||       || ....|..|.|...|.:.|
  Rat  1793 VLVAE-TGAQQDG-NVTKWYD--AY-----FNKARPYFTNEGFPNP-PCIEGKTKFSGNEEIYVI 1847

  Fly  1202 GTANC---DKHQAGYCNGPLRAGTTYRIKIRAFTDEDKFTDTVYSSPITT------ERSDTVIVA 1257
            |..|.   ..::...|||||:....|..|.||.....:|||:.||.||.|      ||:..:|::
  Rat  1848 GADNACMIPGNEEKICNGPLKPKKQYLFKFRATNVMGQFTDSEYSDPIKTLGEGLSERTVEIILS 1912

  Fly  1258 AT---VSAVLLVAMVLVV-----------VYCQHRCQLIRRASKL--------ARMQDELAALPE 1300
            .|   :|.:||...:...           .|.....::|....||        ..::||......
  Rat  1913 VTLCILSIILLGTAIFAFARIRQKQKEGGTYSPRDAEIIDTKFKLDQLITVADLELKDERLTRLL 1977

  Fly  1301 GYITPNRPVHVKDFSEHYRIMSADSDFRFSEEFEELKHVGRDQACSFANLPCNRPKNRFTNILPY 1365
            .|....:|:..|.|.:|...:..:|:.:|.|||.||....:|.:.:.|:||.||.||||.||.||
  Rat  1978 SYRKSIKPISKKSFLQHVEELCTNSNLKFQEEFSELPKFLQDLSSTDADLPWNRAKNRFPNIKPY 2042

  Fly  1366 DHSRFKLQPVDDDDGSDYINANYMPGHNSPREFIVTQGPLHSTREEFWRMCWESNSRAIVMLTRC 1430
            :::|.||.......|||||||:|:.|:..|.|||.|||||..|..:||||.||:.::.:||||:|
  Rat  2043 NNNRVKLIADVSLPGSDYINASYVSGYLCPNEFIATQGPLPGTVGDFWRMVWETRTKTLVMLTQC 2107

  Fly  1431 FEKGREKCDQYWPVD-RVAMFYGDIKVQLIIDTHYHDWSISEFMVSRNCESRIMRHFHFTTWPDF 1494
            |||||.:|.||||.| :....:|||.:..:::....||:|.:..:.|:.:...:|..:||.||:.
  Rat  2108 FEKGRIRCHQYWPEDNKPVTVFGDIVITKLMEDIQIDWTIRDLKIERHGDCMTVRQCNFTGWPEH 2172

  Fly  1495 GVPEPPQSLVRFVRAFRDVIGTDMRPIIVHCSAGVGRSGTFIALDRILQHIHKSDYVDIFGIVFA 1559
            ||||....|:.||:..|.....|..|::|||||||||:|.|||||.:.|||:..|:|||:|:|..
  Rat  2173 GVPENTTPLIHFVKLVRTSRAHDTTPMVVHCSAGVGRTGVFIALDHLTQHINDHDFVDIYGLVAE 2237

  Fly  1560 MRKERVFMVQTEQQYVCIHQCLLAVLEGK 1588
            :|.||:.|||...||:.:|||:|.:|..|
  Rat  2238 LRSERMCMVQNLAQYIFLHQCILDLLSNK 2266

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ptp4ENP_001162669.1 FN3 151..242 CDD:238020 24/99 (24%)
fn3 247..328 CDD:278470 22/106 (21%)
fn3 343..417 CDD:278470 18/94 (19%)
fn3 443..525 CDD:278470 22/87 (25%)
FN3 548..611 CDD:238020 13/65 (20%)
FN3 620..706 CDD:238020 27/95 (28%)
fn3 708..796 CDD:278470 19/94 (20%)
fn3 824..886 CDD:278470 16/89 (18%)
fn3 902..978 CDD:278470 17/94 (18%)
fn3 1013..1092 CDD:278470 18/84 (21%)
UP_III_II 1106..>1248 CDD:297589 46/156 (29%)
PTPc 1329..1582 CDD:214550 121/253 (48%)
PTPc 1355..1582 CDD:238006 109/227 (48%)
PtprqNP_075214.2 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D16347at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

Return to query results.
Submit another query.