DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ptp4E and IA-2

DIOPT Version :9

Sequence 1:NP_001162669.1 Gene:Ptp4E / 31425 FlyBaseID:FBgn0004368 Length:1767 Species:Drosophila melanogaster
Sequence 2:NP_608562.4 Gene:IA-2 / 33277 FlyBaseID:FBgn0031294 Length:1319 Species:Drosophila melanogaster


Alignment Length:1443 Identity:299/1443 - (20%)
Similarity:507/1443 - (35%) Gaps:427/1443 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   517 SKGVASNASDITR-----YTRPAAPLIQELRSIDQGLMLSWRSDVNSRQDRYEVHYQRNGTREER 576
            ::|.|.:....|.     :::...|..|:.:..||......:...::.|:  .||:.|:..:.|.
  Fly    37 ARGTAGHQESATGECQQFWSKQRPPFDQQQQQEDQDPEQDPQQHPSTPQE--SVHHHRSPRQHEL 99

  Fly   577 TMATNETSLTIHYLHPGSGYEVKVHAISHGVR----------------------SEPHSYFQ--- 616
            .....:...|:    |..|.    |.||.|.|                      |.|....|   
  Fly   100 LHHQRKVPPTL----PARGR----HLISEGARRREVRGCGAGGGGLLCCSLDALSRPAKLLQFGV 156

  Fly   617 ----------AVFPKPPQNLTLQTVHTNLVVLHWQ-APEGSDFSEYVVRYRTDASPWQRISGLHE 670
                      ....:...|:..|.|.| |.:.|.: ..:.:.|.:.:.....|....:: :.|.|
  Fly   157 LLLILLLATHGDLAQAEGNVGCQFVRT-LCIPHSEVCYDDNIFGKCIPTTGVDVEDIEK-TPLTE 219

  Fly   671 NEARIKDMHYGERYLVQVNTVSFGVESPH----------PLELNVTMPPQPVSNVVPLVDS---- 721
            :::|:.     ...|.::.....|.:.|:          .|:....:||...:|:.|....    
  Fly   220 DQSRVL-----ATMLEELQGAGLGWDHPYVQCRIQGSLFSLQRQQQLPPNLCANLAPTPPEFGDP 279

  Fly   722 ----RNLTLEWPRPDGHVDFYTLKWWPTDEEDRVEFKNVTQLEDLSSPSVRIPIEDLSPGRQYRF 782
                ..:....|.|:..:|:|.....|......:..|.|.:.:          .:|:     |..
  Fly   280 ASALAYVRFTPPEPEAELDYYEQPAGPAQFYPALRKKQVRESD----------ADDM-----YLN 329

  Fly   783 EVQASSNGIRSGTTHLSTRTMPLIQSDVFIANAGHEQGQDETITLSYTPTPADSTRFDIYRFSMG 847
            .:......:|...:.|          :.|....||.|                ||:.|.      
  Fly   330 RMLQDRRRLRHDPSEL----------EHFGKMDGHGQ----------------STQLDA------ 362

  Fly   848 DPTIKD------------KEKLA---NDTERKLSFSGLTPGKLYNVTVWTVSGGVAS----LPVQ 893
             |:|.|            :::||   .|.:|:...:.|   :||.:.       .||    .|.|
  Fly   363 -PSIMDAFLDTERQRIEREQQLAAAEQDADRRAEQNRL---ELYQIL-------AASEPDPQPYQ 416

  Fly   894 RLYRLHPLPISDLKAIQVAAREITLHWTAPAGEYTDFELQYLSADEEAPQLL--QNVTKNTEI-- 954
            |.....|..:..|:||              ..:....||:......:||..:  :.|.:::|:  
  Fly   417 RKPAAQPNAMDQLEAI--------------VEQQQQRELKEQQEQAKAPVYVPPEEVNESSELYF 467

  Fly   955 --------------------TLQGLRPYHNYTFTVVVRSGSIQGTDFADVSVSTLMRSSAPISAS 999
                                .::..:|..::...:....|.:|........|.|      .:.|:
  Fly   468 PDNFAPFKRARGRSRGGLAEEVEDEQPKRSFFRELAGEQGLVQEPPLRFRHVET------EVDAT 526

  Fly  1000 YQTLTAPPGKVDYFQPSDV--QPGEVTFEW-----SLEPAEQHGPIDYFRITCQNADDAADVSSY 1057
            .:.:...|.......|.||  |..|:.||.     ||.|.|:.                |.::|.
  Fly   527 PELVKRRPASFKQLDPYDVSLQQQEMAFESGLLRNSLTPLEEE----------------AMLASN 575

  Fly  1058 EFPVNA------TQGKI----------DGL---VPGNHYIFRIQAKSALGYGAEREHIQTM---P 1100
            .||..|      |:|.:          ||:   .|.|  :.:....:.||: |..|.:...   |
  Fly   576 SFPRQAKSQRVYTEGGLLLMPQDEQDTDGMQADEPEN--VKQSLLANMLGF-ARHERLDVKKPGP 637

  Fly  1101 ILAPPVPEPSVTPLEVSRTSSTIEISFRQGYFS--------------NAHG----MVRSYTIIIA 1147
            :|.|    ||:...|:|....|.:...::|:.:              :||.    |.:.::   |
  Fly   638 LLGP----PSLGSAELSNQLETEKAHKQKGHGNKEVLPAHIKGNDEDDAHKKKKVMKQQHS---A 695

  Fly  1148 EDVGKNASGLE---------MPSWQD-------------VQAYTVWLPYQAIEPYNPFLTSNGSR 1190
            ||...:....|         :.||.|             :|.|..:|..|..|......::|..|
  Fly   696 EDHAPHTVDTEYVHVFVKNPIDSWNDGQRIMKELEQILHMQGYFSYLTVQQHEVSFRVNSNNPER 760

  Fly  1191 KSSLEAEHFTI----GTANCDKHQAGYCNGPLRAGTTYRIKIRAFTDEDKFTDTVYSS------- 1244
            |::.:... ||    |..|..:.:.|:.  .|.||....||       |....:|.||       
  Fly   761 KTAGDVAR-TINENRGVKNNIQRRVGFY--VLHAGVGDVIK-------DLQDPSVSSSRIELAEQ 815

  Fly  1245 -PITTERSDTVIVAATVSAVLLVAMVLVVVYCQHRCQLIRRASKLARMQDELAA----------- 1297
             |..|.....:...|..:||:::.:.|:::. :|.    |:..||..:|..:|.           
  Fly   816 GPDVTHIMAYMFAGAGAAAVIVIFVTLILIK-RHD----RKRDKLGGLQSGIAGAETCSKDYQEL 875

  Fly  1298 ---------------------------LPEGYIT------PNRPVHVK---------------DF 1314
                                       .|.|.||      ..||...:               |.
  Fly   876 CRARMAGKAGGGGNSTGGAAGGGSNEPAPSGRITSLSKENEGRPPSSRSSTSSWSEEPALTNMDI 940

  Fly  1315 SEHYRIMSADSDF-----RFSEEFEEL-KHVGRDQACSFANLPCNRPKNRFTNILPYDHSRFKLQ 1373
            |..:.::|...|.     |...|:|.| ::.....|...|:.|.....||....|||||||..|.
  Fly   941 STGHMVLSYMEDHLRNKGRLQREWEALCRYEAEPSAREAASQPQCAGLNRPGAPLPYDHSRVVLN 1005

  Fly  1374 PVDDDDGSDYINANYMPGHNSPR--EFIVTQGPLHSTREEFWRMCWESNSRAIVMLTRCFEKGRE 1436
            .:.:.:|.||:||:.:..|: ||  .::..||||.||...||:|.||..:..||.|.|..|.|..
  Fly  1006 HLANAEGLDYVNASTITDHD-PRAPAYVAAQGPLPSTLAHFWQMIWEQGAVVIVALCRLQENGEV 1069

  Fly  1437 KCDQYWPVDRVAMFYGDIKVQLIIDTHYHDWSISEFMVS-------RNCESRIMRHFHFTTWPDF 1494
            .|.:||| :..|..|...:|.|:.:   |.| ..:::|.       |..|:|.:..|||.:||..
  Fly  1070 ACARYWP-EEGAEVYHIYEVHLVSE---HIW-CDDYLVRSFYLKNLRTSETRTVTQFHFLSWPHM 1129

  Fly  1495 GVPEPPQSLVRFVR----AFRDVIGTDMRPIIVHCSAGVGRSGTFIALDRILQHIHK-SDYVDIF 1554
            |||...::|:.|.|    ::|   |....||:||.|||.||:|.:|.||.:|:.::| :..:||.
  Fly  1130 GVPAQAKALLDFRRKVNKSYR---GRRSCPIVVHGSAGAGRTGVYILLDLVLERMNKGAREIDIA 1191

  Fly  1555 GIVFAMRKERVFMVQTEQQYVCIHQCLLAVLEGKEHLLADSLELHANDGYEVTKIYLERQPQTKM 1619
            ..:..:|.:|..:|.|.||:..:   |:||.| :.|.:..:|.  ||...|  |..|::.|....
  Fly  1192 ATLEHLRDQRAGVVATRQQFEFV---LMAVAE-EVHAILKALP--ANTSGE--KRELDKDPVVGG 1248

  Fly  1620 GTLPIRASLAMAEKLDADLMTNKDEDEDQEQQQQQQLQLATEVKPKGSNDDEEDEEDDDDDDDDQ 1684
            |:    :|....|.|        .||:.||..:::....:::.......:.|:|::.::....||
  Fly  1249 GS----SSTTTKEPL--------KEDKAQEAAEEEAPTSSSKAAAAAKKEKEKDKDKEEKQAKDQ 1301

  Fly  1685 QPLNNETTATLSS 1697
            ..:....|...|:
  Fly  1302 AKVAEPRTPAKSA 1314

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ptp4ENP_001162669.1 FN3 151..242 CDD:238020
fn3 247..328 CDD:278470
fn3 343..417 CDD:278470
fn3 443..525 CDD:278470 2/7 (29%)
FN3 548..611 CDD:238020 14/84 (17%)
FN3 620..706 CDD:238020 15/96 (16%)
fn3 708..796 CDD:278470 14/95 (15%)
fn3 824..886 CDD:278470 13/76 (17%)
fn3 902..978 CDD:278470 11/99 (11%)
fn3 1013..1092 CDD:278470 24/104 (23%)
UP_III_II 1106..>1248 CDD:297589 39/193 (20%)
PTPc 1329..1582 CDD:214550 91/267 (34%)
PTPc 1355..1582 CDD:238006 85/240 (35%)
IA-2NP_608562.4 Receptor_IA-2 708..795 CDD:288410 19/89 (21%)
PTPc 960..1220 CDD:214550 94/271 (35%)
PTPc 995..1220 CDD:238006 86/236 (36%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45443506
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm46470
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.840

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