DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ptp4E and Ptpmeg2

DIOPT Version :9

Sequence 1:NP_001162669.1 Gene:Ptp4E / 31425 FlyBaseID:FBgn0004368 Length:1767 Species:Drosophila melanogaster
Sequence 2:NP_572576.1 Gene:Ptpmeg2 / 31907 FlyBaseID:FBgn0028341 Length:827 Species:Drosophila melanogaster


Alignment Length:815 Identity:200/815 - (24%)
Similarity:328/815 - (40%) Gaps:175/815 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   885 GGVASLPVQRLYRLHPLPISDLKAIQ-VAAREITLHWTAPAGEYTDFEL-QYLSADEEAPQL-LQ 946
            ||..:.||:|    |   ||...|:: :.||:              |:: :.:|..|:..|: |:
  Fly   107 GGGGAAPVRR----H---ISHTTAVKFLYARK--------------FDIPRAVSLYEQHEQIRLK 150

  Fly   947 NVTKNTEITLQGLR-PYHNYTFTVV-VRSGSIQGTDFADVSVSTLMRSSAPISASY-QTLTAPPG 1008
            ....|.:..::.|| ......||:: .|:.|     .|.:::.|..|.| |:|.|: .||.....
  Fly   151 EYLYNIDPDVEPLRSELQTGKFTILPARTSS-----GAAIALFTANRHS-PLSVSHTTTLQGIVY 209

  Fly  1009 KVD-YFQPSDVQPGEVTFEWSLEPAEQHGPIDYFRITCQNADDAADVSSYEFPVNATQGKIDGLV 1072
            ::| ..|.|:.|...:.|.:.:. ..::...||            |:|.          ||..|:
  Fly   210 QLDSALQDSETQRAGLVFIYDMS-GSKYSNFDY------------DLSQ----------KILTLL 251

  Fly  1073 PGNH--------------------YIFRIQAKSALGYGAEREHIQTMPILAPPVPEPSVTPLEVS 1117
            .|.:                    .|.|:..:..|   .||....::|.||..||..:: |:.: 
  Fly   252 KGGYPARLKKVLIVTAPLWFKAPFKILRLFVREKL---RERVFTVSVPQLALHVPRKAL-PIHL- 311

  Fly  1118 RTSSTIEISFRQGYFSNAHGMVRSYTIIIAEDV---GKNASGLEMPSWQDVQAYTVWLPYQAIEP 1179
              ..|:|:.......|....|......::|..|   |.:.||....|             .||  
  Fly   312 --GGTLEVDHATWLLSCRQSMTNREDELLANIVGVGGGSGSGSAAGS-------------AAI-- 359

  Fly  1180 YNPFLTSNGSRKSSLEAEHFTIGTANCDKHQAGYCN-------------GPLRAGTTYRIKIRAF 1231
                :::||:...:..    |..|.....||.|..|             |....|.|  ....|.
  Fly   360 ----VSTNGTETEAAT----TAATIISAVHQLGDNNTTVVTVSNGVGPAGSASGGAT--TAASAA 414

  Fly  1232 TDEDKFTDTVYSSPITTERSDTVIVAATVSAVLLVAMVLVVVYCQHRCQLIRRASKLARMQDELA 1296
            |:.::.......||...:.::....:::.:|.:...:.|...........|..|:..|......|
  Fly   415 TEPNENITINGLSPSHRQAANNSSSSSSSAATVANPLKLNTSGSADNNSTITNATTAAGAAGAAA 479

  Fly  1297 ALPEG----YITPNRPVHVKD-FSEHYRIMSADSDFR----------------FSEEFEELKHVG 1340
            .....    :.:.|.|..... ||:...:...:.|.:                ..:|:.::::..
  Fly   480 GTTTNGGGEFWSENPPSSASSGFSDDDSLAGQEGDPKPIDQIVQMVKQRGRHGLIKEYADIRNRA 544

  Fly  1341 RDQACSFANLPCNRPKNRFTNILPYDHSRFKLQPVDDDDGSDYINANYMPGHNSPREFIVTQGPL 1405
            .:.....|.:..|..|||:|::|.|||||..|...|.|:.|||||||::.|:.....:|.|||||
  Fly   545 PEGTFLHARMRANLTKNRYTDVLCYDHSRVVLAHEDGDEPSDYINANFVDGYKQKNAYISTQGPL 609

  Fly  1406 HSTREEFWRMCWESNSRAIVMLTRCFEKGREKCDQYW-PVDRVAMFYGDIKVQLIIDTHYHDWSI 1469
            ..|.::||||.||.:...|||.||..|:||.||.||| |.:..::.:||..|:.|......|:.:
  Fly   610 PKTSQDFWRMIWEQHCLVIVMTTRVMERGRVKCGQYWEPTEESSLEFGDYHVRTISVECNEDYMV 674

  Fly  1470 SEFMVSRNC---ESRIMRHFHFTTWPDFGVPEPPQSLVRFVRAFRDV-------IGTDMR----- 1519
            :...: ||.   |.|.:.|:.||:|||:|||....:::.|::..|:.       :|....     
  Fly   675 ASLEL-RNIKTDEIRNVSHWQFTSWPDYGVPSSAMAMLNFLQKVREKQAQLVQGLGDTWAGHPRG 738

  Fly  1520 -PIIVHCSAGVGRSGTFIALDRILQHIHKSDYVDIFGIVFAMRKERVFMVQTEQQYVCIHQCLLA 1583
             ||:||||||:||:||||.||..:..:......||.|.|..:|.:|.:.:|...|||..|..|:.
  Fly   739 PPIVVHCSAGIGRTGTFITLDICISRLEDVGTADIRGTVEKIRSQRAYSIQMPDQYVFCHLALIE 803

  Fly  1584 VLEGKEHLLADSLELHANDGYEVTKIYLERQPQTK 1618
            ....:..|....|.     |::      ||:|.::
  Fly   804 YAYSRGMLQTVDLA-----GFD------EREPDSE 827

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
Ptp4ENP_001162669.1 FN3 151..242 CDD:238020
fn3 247..328 CDD:278470
fn3 343..417 CDD:278470
fn3 443..525 CDD:278470
FN3 548..611 CDD:238020
FN3 620..706 CDD:238020
fn3 708..796 CDD:278470