DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ptp4E and ephb4b

DIOPT Version :10

Sequence 1:NP_525076.2 Gene:Ptp4E / 31425 FlyBaseID:FBgn0004368 Length:1767 Species:Drosophila melanogaster
Sequence 2:NP_571492.1 Gene:ephb4b / 30691 ZFINID:ZDB-GENE-990415-65 Length:976 Species:Danio rerio


Alignment Length:780 Identity:143/780 - (18%)
Similarity:247/780 - (31%) Gaps:268/780 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   910 QVAAREITLHWTAPAGEYTDFELQY-------------LSADEEAPQLLQNVTKNTEITLQGLRP 961
            |:....:||.|:.|.......:|.|             ..||....:..|.......:.::||.|
Zfish   336 QINDTVVTLEWSEPLDRGGRSDLSYSVECMHCRGSLCVQCADSITYRPGQMGVSGRRVIIRGLLP 400

  Fly   962 YHNYTFTVVVRSGSIQGTDFADVSVSTLMRSSAPISASYQTLTA-----PPGKVDYFQPSDVQPG 1021
            :..|||||:.::|           ||.:..:| |.|:|....|:     |...:...:.|:   .
Zfish   401 HTTYTFTVLAQNG-----------VSAVSHTS-PASSSVNITT
SRDVAVPVSGIRRIKASE---S 450

  Fly  1022 EVTFEWSLEPAEQHGPIDY-FRITCQNADDAAD-VSSYEFPVNATQGKIDGLVPGNHYIFRIQAK 1084
            .|:..|::.|..||...|| .|.:.:..||... |||     .::...::.|...:.|..:::|:
Zfish   451 SVSISWTVPPQTQHSIQDYQLRYSLKGQDDGWQYVSS-----RSSSVVLNDLSRASQYQVQVRAR 510

  Fly  1085 SALGYGAEREHIQTMPILAPPVPEPSVTPLEVSRTSSTIEISFRQGYFSNAHGMVRSYTIIIA-- 1147
            :|.|||    |..: .:....:|:...:|..:..|...:.|..          ::....:|:|  
Zfish   511 TAAGYG----HFSS-AVSIST
LPDDEESPSRLMLTGVLVAIGL----------LILIAVVIVAVF 560

  Fly  1148 --------EDVGKNASGLEMPSWQDVQAYTVWLPYQAIEPYNPFLTSNGSRKSSLEAE------H 1198
                    .|...:.|| :....|.::.|        |:|:.....:...|:.:.|.:      .
Zfish   561 CFRRSTRRRDPDPDKSG-QFLMGQGIKVY--------IDPFTYEDPNEAVREFAKEIDVSFVKIE 616

  Fly  1199 FTIGTANCDKHQAGYCNGPLRAGTTYRIKIRAFTDEDKFTDTVYSSPITTERSDTVIVAATVSAV 1263
            ..||.....:    .|.|.|:........:...|.:..:||                        
Zfish   617 EVIGAGEFGE----VCRGRLKVPGKKENYVAIKTLKGGYTD------------------------ 653

  Fly  1264 LLVAMVLVVVYCQHRCQLIRRASKLARMQDELAALPEGYITPNRPVHVKDFSEHYRIMSADSDFR 1328
                        :.|...:..||.:.:.|.......||.||.:.||.:  .:|:....:.||..|
Zfish   654 ------------KQRRDFLSEASIMGQFQHPNIIHLEGVITASCPVMI--LTEYMENGALDSFLR 704

  Fly  1329 FSE-EF-------------------EELKHVGRDQACSFANLPCNRPKNRFTNILPYDHSRFKLQ 1373
            .:: :|                   .|:..|.||.|.  .|:..|  .|....:..:..|||..:
Zfish   705 LNDGQFTPIQLVGMLRGIASGMKYLSEMSFVHRDLAA--RNILVN--SNLVCKVSDFGLSRFLTE 765

  Fly  1374 PVDDDDGSDYINANYMPGHNSP-----REFIVTQGPLHSTREEFWRMCWESNSRAIVMLTRCFEK 1433
            ...|...:..:.........:|     |:|        ::..:.|       |..|||       
Zfish   766 NSSDPTYTSSLGGKIPIRWTAPEAIAFRKF--------TSASDVW-------SYGIVM------- 808

  Fly  1434 GREKCDQYWPVDRVAMFYGDIKVQLIIDTHYHDWSISEFMVSRNCESRIMRHFHFTTWPDFGVPE 1498
                    |.|    |.:|:...          |.:|...|....|.            |:.:|.
Zfish   809 --------WEV----MSFGERPY----------WDMSNQDVINAIEQ------------DYRLPP 839

  Fly  1499 PPQ----------------------------SLVRFVR--AFRDVIG----------TDMR--PI 1521
            ||:                            :|.|.:|  |...:.|          .|.|  |.
Zfish   840 PPECPASLHQLMLDCWQKERSSRPRFCAIVSALDRLIRNPASLKITGRIPDGPSHPLLDQRAPPP 904

  Fly  1522 IVHCSA---------------GVGRSGTFIALDRILQHIHKSDYVDIFGIVFAMRKERVF-MVQT 1570
            :.|||:               ...::| |.|:..| .||...|.:.| |:..|..::::. .|||
Zfish   905 LSHCSSVADWLRAIKMERYEDAFMQAG-FTAIQHI-THISTEDLLRI-GVTLAGHQKKILSSVQT 966

  Fly  1571  1570
            Zfish   967  966

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ptp4ENP_525076.2 FN3 <94..>334 CDD:442628
fn3 247..328 CDD:394996
FN3 319..>749 CDD:442628
fn3 708..796 CDD:394996
fn3 902..978 CDD:394996 19/80 (24%)
fn3 1013..1092 CDD:394996 21/80 (26%)
PTP_tm 1127..1247 CDD:465889 19/135 (14%)
R3-PTPc 1358..1579 CDD:350396 48/276 (17%)
ephb4bNP_571492.1 EphR_LBD 25..198 CDD:470656
FN3 327..431 CDD:238020 25/106 (24%)
FN3 438..526 CDD:238020 23/100 (23%)
EphA2_TM 540..610 CDD:464211 13/88 (15%)
PTKc_EphR_B 608..876 CDD:173638 57/369 (15%)
SAM_superfamily 906..969 CDD:472832 16/64 (25%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.