DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ptp4E and Ptprj

DIOPT Version :9

Sequence 1:NP_001162669.1 Gene:Ptp4E / 31425 FlyBaseID:FBgn0004368 Length:1767 Species:Drosophila melanogaster
Sequence 2:XP_038960581.1 Gene:Ptprj / 29645 RGDID:3454 Length:1354 Species:Rattus norvegicus


Alignment Length:1605 Identity:376/1605 - (23%)
Similarity:611/1605 - (38%) Gaps:432/1605 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   151 PDPPANLSVQLR---SSKSAFITWRPPGSG----RYSGFRIRVLGLTDLPFERSYSLEGNETLQL 208
            |.|....|.:||   ::.:|.::...||:|    |.:|:|.|                 ....:|
  Rat    40 PRPLRVRSARLRRVAAAAAAAMSPGKPGAGGAGTRRTGWRRR-----------------RRRRRL 87

  Fly   209 SAKELTPG-GSYQVQAYSVYQGKESVAYTSRNFTTKPNTPGKFIVWFRNETTLLVLWQPPFPAGI 272
            .|:...|| |....:....:||.:.:...:|...|.|.:||  :.|......||:.......|| 
  Rat    88 EAETRAPGFGHTAGRVPGTFQGAQGMKPAARETRTPPRSPG--LRWALLPLLLLLRQGQVVCAG- 149

  Fly   273 YTHYRVSITPD-----DAIQSVLYVEREGEPPGPAQAAFK--------------------GLVPG 312
                  ::.|.     :|:.|...|....:....|.:.:|                    ||.|.
  Rat   150 ------AVAPSPVFDVEAVTSPTSVVLTWKHNDSATSEYKINEGNTLRYTVKNQTSFNITGLSPA 208

  Fly   313 REYNISVQTVSEDETSSVPTTARYLTVPERVLNVTFDEAYTTSSSFRVRWEPPRTYSEFDAYQVM 377
            ..|..|:...:.:|||..||.....|.|..|            |..:|.:        ....|.:
  Rat   209 TSYKFSITLGTVNETSGKPTYKNITTEPWPV------------SDLQVAY--------IGVTQAL 253

  Fly   378 LSTSRRIFNVPRAANGDSVYFDYPDILEPGRTYEVVVKTIADNVNSWPASGEVT-LRPRPVRSLG 441
            |:.|.        |||.:             :|.:.:..:..|     :||.:: |:|...:||.
  Rat   254 LAWSN--------ANGTA-------------SYRMQIVELTTN-----SSGGISDLKPGTHKSLA 292

  Fly   442 GFLDDRSNALHISW----EPAETGRQDSYRISYHEQTNASEVPAPFPVAAESQITTNLTEYTLDS 502
              :...:...|..|    ..|:....:...::...|.:.:.:.:..|.:|..   .:|||..|..
  Rat   293 --VQGSNETQHDLWVTEGVSADANGTEGSPVANISQLHKNSLASADPPSARD---PSLTEVLLTE 352

  Fly   503 LLAGRRYLIAVQALSKGVASNASDITR--------YTRPAAPLIQELRSI---DQGLMLSWRSDV 556
            |....:|.:.:.       |.|:|.|.        .|.|..  :.::|::   |..:.|:|:|:.
  Rat   353 LKPDTQYKVTIY-------SQAADGTEGQPGNKVFKTNPIQ--VSDIRAVNISDSNMTLTWKSNN 408

  Fly   557 NSRQDRYEVHYQRNGTREERTMATNETSLTIHYLHPGSGYEVKVHAISHGVRSEPHSYFQAVF-- 619
            |.....:.......|..:......|||...|..|...:.|.:.|..........|.  |..|:  
  Rat   409 NESHASFTYKIYVAGGSDSINETVNETQAVIRGLSSSTLYNITVLPFLGQTAGIPG--FLQVYTS 471

  Fly   620 PKPPQNLTLQTVHTNLVVLHWQAPEGSDFSEYVVRYRTDASPWQRISGLHENEARIKDMHY---- 680
            |:|..:..:..|....:.|.|::.:...|..::.:..:: ..|...:|         |:.|    
  Rat   472 PRPVSDFRVTNVSLREIGLAWRSNDSESFEIFITQEGSE-KRWNASTG---------DLSYIVEN 526

  Fly   681 ---GERYLVQVNTVSF-----GVESPHPLELNVTMPPQPVSNVVPLVDSRNLTLEWPRPDGHVDF 737
               |..|..::    |     |.|.|....:..|.........|..|.:..:.|||..       
  Rat   527 LKPGTSYQFEI----FPRGPNGTEGPSQTVVGRTDCSAVTDIRVVSVSTTEIQLEWQN------- 580

  Fly   738 YTLKWWPTDEEDRVEFKNVTQLED----LSSPSVRIPIEDLSPGRQYRFEVQASSNGIRSGTTHL 798
                   ||......:..|.:.|:    .:|....|.:..|:||..|...:....:.:...::.:
  Rat   581 -------TDSASGYTYHLVLESENGSIKTNSSQKWITVGGLTPGTLYNVTIFPEVDQMEGNSSSI 638

  Fly   799 STRTMPLIQSDVFIANAGHEQGQDET----ITLSYTPTPADSTRFDIYRFSMGDPTIKDKEKLAN 859
            :..|.|        :|..:.:....|    |........:.|..:.:.....||.        :|
  Rat   639 TQYTRP--------SNVSYIEVNTNTTVAAIQWKNLDAASASYSYSVLILKAGDG--------SN 687

  Fly   860 DTER-----KLSFSGLTPGKLYNVTVWTVSGGVA---SLPVQRLYRLHPLPISDLKAIQVAARE- 915
            .|.|     .::..||.||..|.|.::|......   .:|.|:|:.:.|..:..|.. :|..:| 
  Rat   688 VTSRVRDIPSVTIPGLIPGVSYEVKIFTKIRNTEVGNEVPGQKLFCMEPAQVDSLHC-EVVPKEP 751

  Fly   916 -ITLHWTAPAGEYTDFELQYLSADEEAPQLLQNVTKN------TEITLQGLRPYHNYTFTVVVRS 973
             :.|.|..|.|..:.|||...|...:....|:|.|.:      ||:|      |.|::       
  Rat   752 ALVLKWACPPGMNSGFELGVRSDAWDNMTHLENCTLDNDTECRTEVT------YLNFS------- 803

  Fly   974 GSIQGTDFADVSVSTLM--RSSAPISASYQT-LTAPPGKVDYFQPSDVQPGEVTFEWSLEPAEQH 1035
                 |.: ::|::||.  :.:.|..::..| :|.||                            
  Rat   804 -----TSY-NISIATLSCGKMALPTQSTCTTGITDPP---------------------------- 834

  Fly  1036 GPIDYFRITCQNADDAADVSSYEFPVNATQGKIDGLVPGNHYIFRIQAKSALGYGAEREHIQTMP 1100
                                                                             
  Rat   835 ----------------------------------------------------------------- 834

  Fly  1101 ILAPPVPEPSVTPLEVSRTSSTIEISFRQGYFSNAHGMVRSYTIIIAE-DVGKNASGLEMPSWQD 1164
               ||...|::|  .||..|..::.|    .|..:||.:::|.:::.. :.|:       || .|
  Rat   835 ---PPDGSPNIT--SVSHNSVKVKFS----GFEASHGPIKAYAVLLTTGEAGQ-------PS-TD 882

  Fly  1165 VQAYTVWLPYQ-----AIEPYNPFL---TSNGSRKSSLEAEHFTIGTANCDKHQAGYCNGPLRAG 1221
            |..||    |:     |.:.|..:|   ...|..:...||.::.|...| .....||.||.|...
  Rat   883 VLKYT----YEDFKKGASDTYVTYLIRIEEKGQSQGLSEALNYEIDVGN-QSTTLGYYNGRLEPL 942

  Fly  1222 TTYRIKIRAFT--------------DEDKFTDTVYSSPITTERSDTVIVAAT----VSAVLLVAM 1268
            .:||..:..||              ||...:.:.||..::..:...||..|.    ..|:.:||:
  Rat   943 GSYRACVAGFTNITYNLQNDGLINGDESYVSFSPYSEAVSLPQDPGVICGAVFGCIFGALAIVAV 1007

  Fly  1269 VLVVVYCQHR----------CQLIRRASKLARMQDELAALPEGYITPNRPVHVKDFSEHYRIMSA 1323
            ...:.:.:.|          .|:..:.|||.|                    |::|..:::...|
  Rat  1008 GGFIFWRKKRKDAKNNEVSFSQIKPKKSKLIR--------------------VENFEAYFKKQQA 1052

  Fly  1324 DSDFRFSEEFEELKHVGRDQACSFANLPCNRPKNRFTNILPYDHSRFKLQPVDDDDGSDYINANY 1388
            ||:..|:||:|:||.:|.......|.:..||.|||:.|:||||.||.||. |......|||||||
  Rat  1053 DSNCGFAEEYEDLKLIGISLPKYAAEIAENRGKNRYNNVLPYDISRVKLS-VQTHSTDDYINANY 1116

  Fly  1389 MPGHNSPREFIVTQGPLHSTREEFWRMCWESNSRAIVMLTRCFEKGREKCDQYWPVDRVAMFYGD 1453
            |||::|.::||.|||||.:|.::||||.||.|..||||||:|.|:||.||::||| .:.|..|||
  Rat  1117 MPGYHSKKDFIATQGPLPNTLKDFWRMVWEKNVYAIVMLTKCVEQGRTKCEEYWP-SKQAQDYGD 1180

  Fly  1454 IKVQLIIDTHYHDWSISEFMVS--RNCESRIMRHFHFTTWPDFGVPEPPQSLVRF---VRAFRDV 1513
            |.|.:..:....:|:|.:|:|.  ::.||..:|.||||:|||.|||:....|:.|   ||.:...
  Rat  1181 ITVAMTSEVVLPEWTIRDFVVKNMQSSESHPLRQFHFTSWPDHGVPDTTDLLINFRYLVRDYMKQ 1245

  Fly  1514 IGTDMRPIIVHCSAGVGRSGTFIALDRILQHIHKSDYVDIFGIVFAMRKERVFMVQTEQQYVCIH 1578
            |..: .||:|||||||||:|||||:||::..|...:.||::|||:.:|..|..|||||.|||.::
  Rat  1246 IPPE-SPILVHCSAGVGRTGTFIAIDRLIYQIENENTVDVYGIVYDLRMHRPLMVQTEDQYVFLN 1309

  Fly  1579 QCLLAVLEGKEHLLADSLELHANDGYEVT---KIYLERQPQTKMG 1620
            ||:|.::..::....|.:       |:.|   .||...:|.:..|
  Rat  1310 QCVLDIIRAQKDSKVDLI-------YQNTTAMTIYENLEPVSMFG 1347

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ptp4ENP_001162669.1 FN3 151..242 CDD:238020 21/98 (21%)
fn3 247..328 CDD:278470 19/105 (18%)
fn3 343..417 CDD:278470 10/73 (14%)
fn3 443..525 CDD:278470 13/85 (15%)
FN3 548..611 CDD:238020 12/62 (19%)
FN3 620..706 CDD:238020 16/97 (16%)
fn3 708..796 CDD:278470 15/91 (16%)
fn3 824..886 CDD:278470 15/70 (21%)
fn3 902..978 CDD:278470 19/83 (23%)
fn3 1013..1092 CDD:278470 0/78 (0%)
UP_III_II 1106..>1248 CDD:297589 39/164 (24%)
PTPc 1329..1582 CDD:214550 128/257 (50%)
PTPc 1355..1582 CDD:238006 118/231 (51%)
PtprjXP_038960581.1 FN3 153..234 CDD:238020 16/80 (20%)
FN3 384..452 CDD:214495 14/69 (20%)
FN3 472..556 CDD:238020 16/97 (16%)
FN3 559..633 CDD:214495 15/87 (17%)
fn3 644..721 CDD:394996 17/92 (18%)
PTP_tm 852..1017 CDD:408631 40/181 (22%)
R-PTPc-J 1086..1314 CDD:350463 117/230 (51%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 285 1.000 Domainoid score I1546
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D16347at33208
OrthoFinder 1 1.000 - - FOG0001181
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR19134
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
66.020

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