DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ptp4E and ptpn-22

DIOPT Version :9

Sequence 1:NP_001162669.1 Gene:Ptp4E / 31425 FlyBaseID:FBgn0004368 Length:1767 Species:Drosophila melanogaster
Sequence 2:NP_500128.2 Gene:ptpn-22 / 176981 WormBaseID:WBGene00021507 Length:469 Species:Caenorhabditis elegans


Alignment Length:421 Identity:115/421 - (27%)
Similarity:191/421 - (45%) Gaps:76/421 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly  1291 MQDELAALPEGYITPNRPVHVKDFSEHYRIMSADSDFRFSEEFEELKHVGRDQACSFANLPCNRP 1355
            :::|.|..|:.|:           ...|:|.......|...|:.        ..|:.|  |.:..
 Worm    85 LKEEEAYTPQDYL-----------RRFYQIRVEQEKLRMEAEYR--------SECAVA--PQHYA 128

  Fly  1356 KNRFTNILPYDHSRFKLQPVDDDDGSDYINAN--YMPGHNSPREFIVTQGPLHSTREEFWRMCWE 1418
            :||:.:|||||.:|.::|. |.::...|:||:  .:||..:  |||..|.||.:|.:|:|:|..|
 Worm   129 RNRYRDILPYDKNRVEIQK-DSENPEGYMNASLIQLPGGKT--EFIAAQAPLPATLDEWWKMIDE 190

  Fly  1419 SNSRAIVMLTRCFEKGREKCDQYWPVDRV--AMFYGDIKVQLIIDTHYHDWSISEFMVSRNC--- 1478
            .....:|:|.:..|..:.||::||| ::|  :..:||.::.|..:..:.|   .|:::  .|   
 Worm   191 HRVSLVVILCKLVELNKIKCERYWP-EQVGESELFGDYEITLEEEKLFDD---DEYLM--RCLKM 249

  Fly  1479 ------ESRIMRHFHFTTWPDFGVPEPPQSLVRFV----RAFRDVIGTDMRPIIVHCSAGVGRSG 1533
                  |.|.:...|:..|||.|.|...:.|:..:    ....:|...|..||:|||||||||:|
 Worm   250 ENQTTGECRKVHQLHYREWPDHGCPSGEKQLLNMIDLMENIHEEVSPQDSSPILVHCSAGVGRTG 314

  Fly  1534 TFIALDRILQH-----IHKSDYVDIFGIVFAMRKERVFMVQTEQQYVCIHQCLLAVLEGKEHLLA 1593
            |.||::.|.:.     :|.   :||||:|..:||:|..||||:.|:..:|:|:.:..  :.||  
 Worm   315 TIIAINFIREQMKAETLHS---IDIFGLVMTLRKQRASMVQTQDQFQFVHRCIASYC--RRHL-- 372

  Fly  1594 DSLELHANDGYEVTKIYLERQPQTKMGTLPIRASLAMAEKLDADLMTNKDEDEDQEQQQQQQLQL 1658
                     |. :.:..|:..|......||:.:|.::.........|....|:........||  
 Worm   373 ---------GI-IEEPKLDLAPPVATADLPVGSSGSVRLIAPPTPTTGPSTDQTATIANYNQL-- 425

  Fly  1659 ATEVKPKGSNDDEED---EEDDDDDDDDQQP 1686
              ......||..:||   ||.....|..::|
 Worm   426 --HHHQSSSNHMDEDTSTEEAASVPDFPEEP 454

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ptp4ENP_001162669.1 FN3 151..242 CDD:238020
fn3 247..328 CDD:278470
fn3 343..417 CDD:278470
fn3 443..525 CDD:278470
FN3 548..611 CDD:238020
FN3 620..706 CDD:238020
fn3 708..796 CDD:278470
fn3 824..886 CDD:278470
fn3 902..978 CDD:278470
fn3 1013..1092 CDD:278470
UP_III_II 1106..>1248 CDD:297589
PTPc 1329..1582 CDD:214550 88/274 (32%)
PTPc 1355..1582 CDD:238006 84/248 (34%)
ptpn-22NP_500128.2 PTPc 102..365 CDD:214550 90/284 (32%)
PTPc 129..365 CDD:238006 84/247 (34%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001181
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.910

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