DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ptp4E and ptprjb.1

DIOPT Version :9

Sequence 1:NP_001162669.1 Gene:Ptp4E / 31425 FlyBaseID:FBgn0004368 Length:1767 Species:Drosophila melanogaster
Sequence 2:XP_017209718.2 Gene:ptprjb.1 / 101883510 ZFINID:ZDB-GENE-090304-1 Length:1104 Species:Danio rerio


Alignment Length:1387 Identity:326/1387 - (23%)
Similarity:482/1387 - (34%) Gaps:419/1387 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   318 SVQTVSEDETSSVPT------------TARYLTVPERVLNVTFDEAYTTSSSFRVRWEPPRTYSE 370
            |....|.:||.:.||            |..:.|.|....:.| .|.:||:|:      .|.|.:.
Zfish    40 STPPASTNETQATPTTPSTSANTSESQTTPHTTPPSSTSSST-TETHTTAST------TPSTSAN 97

  Fly   371 FDAYQVMLSTSRRIFNVPRAANGDSVYFDYPDILEPGRTYEVVVKTIADNVNSWPASGEVTLRPR 435
            ....|..|.|:     ....|:..|.        ||                             
Zfish    98 TSESQTTLHTT-----ATATAHSSST--------EP----------------------------- 120

  Fly   436 PVRSLGGFLDDRSNALHISWEPAETGRQDSYRISYHEQTNASEVPA-PFPVAAESQITTNLTEYT 499
                         ..|..|..||.|..      |..|.|..|..|: ......|||.||::|..:
Zfish   121 -------------TTLTTSAPPASTSS------STTETTTTSTTPSTSTSTTTESQTTTHMTAIS 166

  Fly   500 LDSLLAGRRYLIAVQALSKGVASNASDITRYTRPAAPLIQELRSIDQGLMLSWRSDVNSRQDRYE 564
            ....                   ::::.|..|.|.:|                            
Zfish   167 TTHF-------------------SSTESTTSTAPTSP---------------------------- 184

  Fly   565 VHYQRNGTREERTMATNETSLTIHYLHPGSGYEVKVHAISHGVRSEPHSYFQAVFPKPPQNLTLQ 629
            |....:.|..:.|..|..|:.|              |:.|...:|:..:   :..|....:.|.:
Zfish   185 VFTSSSTTETQTTTPTTGTATT--------------HSSSTSTQSQTST---STLPTSTSSSTTE 232

  Fly   630 TVHTNL--VVLHWQAPEGSDFSEYVVRYRTDASPWQRISGLHENEARIKDMHYGERYLVQVNTVS 692
            |. |.|  |..|..:.:.|.|.      .|.||.....:..|...                .|:|
Zfish   233 TT-TPLASVTTHSSSTQTSTFP------ITSASTSSSTNETHTTP----------------TTLS 274

  Fly   693 FGVESP---HPLELNVTMPPQPVSNVVPLVDSRNLTLEWPRPDGHVDF---------YTLKWWPT 745
            ....:|   |....:.:......|.....|.:...:.|.|........         .|..:..|
Zfish   275 TSASTPITSHTTATDSSSTGSQTSTPSTTVTTHTSSTESPTSTSSTSHTSTGSSTTSQTTAYSST 339

  Fly   746 DEEDRVEFKNVTQLEDLSSPSVR----------IPIEDLSPGRQYRFEVQASSNGIRSGTTHL-- 798
            |..|.....:.|.....:|.::.          ...|......|.....|.|.:...||:|..  
Zfish   340 DTTDYTSTDSQTSTPTSTSHTITSSHTTQSTGPTSTETTDSSTQTSGSTQTSGSTQTSGSTQTSG 404

  Fly   799 STRTMPLIQSDVFIANAGHEQGQDETITLSYTPTPADS-TRFDIYRFSMGDPTIKDKEKLANDTE 862
            ||:|....|:......:|..|....|.|.|.|.|...: |...|........:...:...:..|.
Zfish   405 STQTSSSTQTSGSTQTSGSTQTSSSTQTSSSTQTSGSTQTSGSIQTSGSAQTSGSTQTSGSTQTS 469

  Fly   863 RKLSFSGLTPGKLYNVTVWTVSGGVASLPVQRLYRLHPLPISDLKAIQVAAREITLHWTAPAGEY 927
            .....||.|.......|..:....|:|......| ..|:|.|      .::...|.|        
Zfish   470 GSTQTSGSTQTSGSTQTSGSTQTSVSSTATATTY-TPPMPSS------ASSTTFTTH-------- 519

  Fly   928 TDFELQYLSADEEAPQLLQNVTKNTEITLQGLRPYHNYTFTVVVRSGSIQGTDFADVSVSTLMRS 992
                         .|..:...:.:|..|                      .|.....:|||...|
Zfish   520 -------------TPSTVSTTSASTTAT----------------------STTHTPTTVSTTSAS 549

  Fly   993 -SAPISASYQT--LTAPPGKVDY-FQPSDVQPGEVTFEWSLEPAEQHGPIDYFRITCQNADDAAD 1053
             :|..:.|.||  .|.|...::: |..||:....|...|                      .|.|
Zfish   550 TTAATTDSNQTSPTTTPKPDLNWKFTVSDITTSSVNLTW----------------------QAID 592

  Fly  1054 VSSYEFPVNATQGK--------------IDGLVPGNHYIFRIQAKSALGYGAEREHIQTMPILAP 1104
            ..:..:.:|.|.|.              :..|..|.:|.|.|.|.:.|.       :::.|:...
Zfish   593 KDTAYYKLNWTDGGTQRNGTNTTALFYWVTNLAAGVNYTFCITAVNQLS-------VESDPVCIS 650

  Fly  1105 PVPEPSV----TPLEVSRTSSTIEISFRQGYFSNAHGMVRSYTIIIAEDVGKNASGLEMPSWQDV 1165
            ...:|:|    |..:|:.:|.|:       :::...|.:..|.:                .| .|
Zfish   651 SFTKPNVVSNLTASKVTTSSVTL-------HWNAPSGPIDYYLV----------------EW-SV 691

  Fly  1166 QAYTVWLPYQAIEPYNPFLTSNGSRKSSLEAEHFTIGTANCDKHQAGYCNGPLRAGTTYRIKIRA 1230
            |..|                   .|:::   |.|.:.|             .|...|.|.|.:.|
Zfish   692 QRST-------------------DRRTN---ETFYVIT-------------DLMPATKYEIHVSA 721

  Fly  1231 FTDEDK--------FTDTVYSSPITTERSDTVIVAATVSAVLLVAMVLVVVYCQHRCQLIRRASK 1287
            .|...|        .|| |.:.|.:|..:. :||...::.:.|:|.:::.|:...     ||.||
Zfish   722 VTGGIKSELVFLTVLTD-VEAGPTSTNNTG-MIVGIVLTLICLIAAIILFVFFYS-----RRQSK 779

  Fly  1288 LARMQDELAALPEGYITPNRPVH-----------VKDFSEHYRIMSADSDFRFSEEFEELKHVGR 1341
                        :.|  |:.|||           |:|:.|:::..||||:..|:||:||||.||.
Zfish   780 ------------KQY--PDIPVHMIRDQTKNALKVEDYEEYFKRNSADSNCGFAEEYEELKSVGT 830

  Fly  1342 DQACSFANLPCNRPKNRFTNILPYDHSRFKL----QPVDDDDGSDYINANYMPGHNSPREFIVTQ 1402
            .|:.:.|....|:.|||::|:||||.||.||    .|.|     ||||||::||:||.:|||..|
Zfish   831 QQSKAAALAIENKAKNRYSNVLPYDASRVKLSMCGSPFD-----DYINANHVPGYNSRKEFIAAQ 890

  Fly  1403 GPLHSTREEFWRMCWESNSRAIVMLTRCFEKGREKCDQYWPVDRVAMFYGDIKVQLIIDTHYHDW 1467
            |||..|..|||||.||.|...|||||:|.|.||.||::|||  .....|.:|.|....:....||
Zfish   891 GPLPVTLNEFWRMIWEKNVYTIVMLTKCNEMGRVKCEKYWP--SATSHYNNISVTTTSEIELDDW 953

  Fly  1468 SISEFMVS--RNCESRIMRHFHFTTWPDFGVPEPPQSLVRFVRAFRDVIGTDMR--PIIVHCSAG 1528
            :|.:|.:.  :..|:|.:|.||||.|||.||||..:.|:.|....|:.:....|  |.:||||||
Zfish   954 TIRDFRIKNVKTAETRYVRQFHFTAWPDHGVPETTEILIDFRHLVREHMDQYSRHSPTVVHCSAG 1018

  Fly  1529 VGRSGTFIALDRILQHIHKSDYVDIFGIVFAMRKERVFMVQTEQQYVCIHQCLLAVLEGKEHLLA 1593
            |||:|||||:|.:...|.:...|||:|||..||..|..|||||.|||.:|||...::..:.....
Zfish  1019 VGRTGTFIAIDHLSFQIERDSMVDIYGIVHDMRMHRALMVQTEDQYVYLHQCAYDLIRSRTGTNV 1083

  Fly  1594 D-------SLELHANDGYEVTK 1608
            |       :|:::.|  .::||
Zfish  1084 DLIYQNAAALQVYQN--VKLTK 1103

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ptp4ENP_001162669.1 FN3 151..242 CDD:238020
fn3 247..328 CDD:278470 3/9 (33%)
fn3 343..417 CDD:278470 14/73 (19%)
fn3 443..525 CDD:278470 16/82 (20%)
FN3 548..611 CDD:238020 9/62 (15%)
FN3 620..706 CDD:238020 17/90 (19%)
fn3 708..796 CDD:278470 16/106 (15%)
fn3 824..886 CDD:278470 12/62 (19%)
fn3 902..978 CDD:278470 7/75 (9%)
fn3 1013..1092 CDD:278470 17/92 (18%)
UP_III_II 1106..>1248 CDD:297589 27/153 (18%)
PTPc 1329..1582 CDD:214550 128/260 (49%)
PTPc 1355..1582 CDD:238006 116/234 (50%)
ptprjb.1XP_017209718.2 NupH_GANP 450..>493 CDD:318883 5/42 (12%)
FN3 568..653 CDD:238020 18/113 (16%)
FN3 655..729 CDD:238020 23/132 (17%)
PTPc 817..1071 CDD:214550 127/260 (49%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D16347at33208
OrthoFinder 1 1.000 - - FOG0001181
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_106915
Panther 1 1.100 - - O PTHR19134
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
54.920

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