DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ptp4E and ptpro

DIOPT Version :9

Sequence 1:NP_001162669.1 Gene:Ptp4E / 31425 FlyBaseID:FBgn0004368 Length:1767 Species:Drosophila melanogaster
Sequence 2:XP_031753458.1 Gene:ptpro / 100135074 XenbaseID:XB-GENE-996931 Length:1201 Species:Xenopus tropicalis


Alignment Length:1314 Identity:329/1314 - (25%)
Similarity:531/1314 - (40%) Gaps:326/1314 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   443 FLDDRS---------NALHISWEPAE------------TGRQDSYRISYHEQTNASEVPAPFPVA 486
            ||.|.|         |.|.||.|..:            ||...:|...:.|..  |.:|:|    
 Frog    13 FLQDGSTFQVALTQDNCLVISLESPDVLSTKSVYLVKITGESKNYFFQFEEFN--STLPSP---- 71

  Fly   487 AESQITTNLTEYTLDSLLAGRRYLIAVQALSKGVASNA-SDITRYTRP---AAPLIQELRSIDQ- 546
                :..|.|.:       |..|:|.:.|::..:||.: ..||..|:|   :..:|.:.|...| 
 Frog    72 ----LVFNATYH-------GLYYIITLIAVNSNMASRSIKSITVLTKPLPVSHVVIHDYRPSPQT 125

  Fly   547 GLMLSWRSDVNSRQDRYEVHYQRNGTREE----RTMATNE----TSLTIHYLHPGSGY-EVKVHA 602
            |::...:     ..:::.|..:.|.:..|    ||:...:    .::..|:| ||:.| .:.:..
 Frog   126 GVVFEVQ-----YPEKFNVFSRVNISYWEGSHFRTVLYKDFFKGKTVFNHWL-PGTCYGNITLQL 184

  Fly   603 ISH------------GVRSEPHSYFQAVFPKPPQNLTLQTVHTNLVVLHWQAPEGSDFSEYVVRY 655
            :|.            ||...|.  |....|.||:|:::|.:..||...  ....|.:..:.:.:|
 Frog   185 VSEASFNKSTLVEYSGVGHRPQ--FHRTVPFPPRNISVQILRLNLSFT--DLLNGKNNEDSLKKY 245

  Fly   656 RTDASPWQRISGLHENEAR--------IKDMHYGERYLVQVNTVSFGVESPHPLELNVTMPPQ-- 710
            :....|........:...|        ..|..|....|.:..:..|       ...|.|:||.  
 Frog   246 QDFTEPESSAEMFEDQNERSTFPSLYNSTDPQYKNNTLPEATSQPF-------WWANETLPPDTD 303

  Fly   711 -------------PVSNVVPLVDSRNLTLEWPRPDGHVDFYTLKWWPTDEEDRVEFKNVTQLEDL 762
                         ||.:.||...|.:..|            .:.|.|.......:..|:....|.
 Frog   304 GFVNGVLPDYEDPPVGSSVPNSSSLSFKL------------LISWLPPKAPTAYDGFNIYIFRDG 356

  Fly   763 SSPSV--------RIPIEDLSPGRQYRFEVQASSNGIRSGTTHLSTRTMPLIQSDV------FIA 813
            ::.:|        ....|...||: |..|:          |:..||.:..:.:|..      :|:
 Frog   357 NASAVTAVDESAHEFVAEMREPGK-YWVEI----------TSFSSTGSCEIRESSAAKAISFYIS 410

  Fly   814 NAGH------EQGQD--------ETITLSYTPTPADSTRFDIYRFSMGDPTIKDKEKLANDTERK 864
            .||.      |:.:|        .|..:|:.|:|..|....:  .|:..|..|:.::|.....::
 Frog   411 PAGDWLEEMTEKPRDVAVKIVNSTTAVVSWAPSPNTSPIVSV--VSLTCPKQKESQRLEKHYCKE 473

  Fly   865 LSFS-----GLTPGKLYNVTVWTVSGGVASLPVQR-LYRLHPLPISDLKAIQVAAREITLHWTAP 923
            ::.|     .|.||..|.|.|:.....:...|.:. |:.:.|..::||....:....:.|.|..|
 Frog   474 VNSSSNIIENLVPGAQYKVAVYFQRSPLIGPPSKAVLFAIDPPGVTDLLLYPLGPSAVVLGWRRP 538

  Fly   924 -AGEYTDF--ELQYLS----ADEEAP--QLLQNVTKNTEITLQGLRPYHNYTFTVVVRSGSIQGT 979
             .|.:..:  |:.|.:    :.|..|  ::...|:....:.:..|.|...|.|.|.:.:......
 Frog   539 YLGAFRKYMVEMFYFNPAAMSSEWTPYYEVAATVSLTASVKVTHLLPAWYYKFRVTMVTWGEPQL 603

  Fly   980 DFADVSVSTLMRSSAPISASYQTLTAPPGKVDYFQPSDVQPGEVTFEWSLEPAEQHGPIDYFRIT 1044
            ...|.:||              .:|||           |.|...:.|:|      :|   ...||
 Frog   604 SCCDTTVS--------------FVTAP-----------VAPQITSVEYS------NG---LLHIT 634

  Fly  1045 CQNADDAADVSS---YEFPVNATQGK--------------IDGLVPGNHYIFRIQAKSALGYGAE 1092
            ....|.|.|:|.   ..:.|.| :||              :..:.||:.|...:.|.:.......
 Frog   635 WAYGDGAFDLSHSRILHWQVIA-EGKNRIKKSVSRSGTATVISVPPGDIYNITVTACTERSSNTS 698

  Fly  1093 REHIQTMPILAPPVPEPSVTPLEVSRTSSTIEISFRQGYFSNAHGMVRSYTIIIAEDVGKNASGL 1157
            ..||.|:.      |.|..|...|::|.:::.:                  :.:.|.:   |...
 Frog   699 LPHIVTLD------PAPIRTLFAVNKTQTSVTL------------------LWVEEGI---ADYF 736

  Fly  1158 EMPSWQDVQAYTVWLPYQAIEPYNPFLTSNGSRKSSLEAEHFTIGTANCDKHQAGYCNGPLRAGT 1222
            |:..||:.:               |...:|.....::.:...||.:              |:..|
 Frog   737 EVSCWQNRE---------------PGAETNQKDPVAVFSHIVTISS--------------LQPDT 772

  Fly  1223 TYRIKIRAFTDEDKFTDTVYS-SPITTERSDTVIVAATVS--AVLLVAM--VLVVVYCQHRCQLI 1282
            :|...:.:.:.......|..: |.:..|.:..|:|.:.::  :|||:|:  ::::|..:...|:.
 Frog   773 SYNCSVTSISHRTPSAPTFLTVSTLVAELNPNVVVISVLALLSVLLIALLFLMLIVLRRKHLQMS 837

  Fly  1283 RRAS-----KLARMQDE--------------LAALPE---------GYITP-----------NRP 1308
            |...     ..|.::.:              |..||.         .||.|           ..|
 Frog   838 RDCGAGTFVNFASLEKDGKLPYNWRRSIFAFLTVLPSCLWTDYLLAFYINPWNKNGLKKRKLTNP 902

  Fly  1309 VHVKDFSEHYRIMSADSDFRFSEEFEELKHVGRDQACSFANLPCNRPKNRFTNILPYDHSRFKLQ 1373
            |.:.||..:.:.||.|||::||.:|||||.||.|.....|:||.||.|||:|||||||.||.||.
 Frog   903 VQLDDFDLYIKEMSKDSDYKFSLQFEELKMVGLDIPHFAADLPSNRGKNRYTNILPYDCSRVKLI 967

  Fly  1374 PVDDDDGSDYINANYMPGHNSPREFIVTQGPLHSTREEFWRMCWESNSRAIVMLTRCFEKGREKC 1438
            .::.|:|:|||||||:||:::.:|:|.|||||..||.:||:|..:...:.|||||:|.||.|.||
 Frog   968 SLEADEGADYINANYIPGYSAAQEYIATQGPLPETRNDFWKMILQQKCQVIVMLTQCNEKRRIKC 1032

  Fly  1439 DQYWPVDRVAMFYGDIKVQLIIDTHYHDWSISEFMVSRNCESRIMRHFHFTTWPDFGVP--EPPQ 1501
            |.|||.....:.||||.|::..:....||:...|.||...|::.:.||:||.|||.|||  ...:
 Frog  1033 DHYWPFTPEPVNYGDITVEMASEEEQSDWAQRVFRVSYADETQCVTHFNFTAWPDHGVPTVNAAE 1097

  Fly  1502 SLVRFVRAFRDVIGTDMRPIIVHCSAGVGRSGTFIALDRILQHIHKSDYVDIFGIVFAMRKERVF 1566
            |:::||:..|........|:.|||||||||:|||||||.::|||...::|||.|:|..:|..|:.
 Frog  1098 SVLQFVQVVRQKALKSKGPVTVHCSAGVGRTGTFIALDWLMQHIRDHEFVDILGLVSELRSHRMS 1162

  Fly  1567 MVQTEQQYVCIHQC 1580
            |||||:|:|.||||
 Frog  1163 MVQTEEQFVFIHQC 1176

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ptp4ENP_001162669.1 FN3 151..242 CDD:238020
fn3 247..328 CDD:278470
fn3 343..417 CDD:278470
fn3 443..525 CDD:278470 24/103 (23%)
FN3 548..611 CDD:238020 13/83 (16%)
FN3 620..706 CDD:238020 16/93 (17%)
fn3 708..796 CDD:278470 18/110 (16%)
fn3 824..886 CDD:278470 16/66 (24%)
fn3 902..978 CDD:278470 16/84 (19%)
fn3 1013..1092 CDD:278470 19/95 (20%)
UP_III_II 1106..>1248 CDD:297589 19/142 (13%)
PTPc 1329..1582 CDD:214550 130/254 (51%)
PTPc 1355..1582 CDD:238006 115/228 (50%)
ptproXP_031753458.1 fn3 422..506 CDD:394996 17/85 (20%)
FN3 515..601 CDD:238020 17/85 (20%)
fn3 709..790 CDD:394996 16/130 (12%)
R-PTPc-O 936..1180 CDD:350462 121/241 (50%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D16347at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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