DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG32772 and Zkscan3

DIOPT Version :9

Sequence 1:NP_001284870.1 Gene:CG32772 / 31420 FlyBaseID:FBgn0052772 Length:520 Species:Drosophila melanogaster
Sequence 2:NP_001012053.2 Gene:Zkscan3 / 306977 RGDID:1305753 Length:553 Species:Rattus norvegicus


Alignment Length:320 Identity:98/320 - (30%)
Similarity:149/320 - (46%) Gaps:49/320 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    93 QNSQQQQQQQQQMQSSSSS-----ENLQS-------------QDDSEDVDLIFNEEGSCPLCNKT 139
            |:|.|....:.:||.:|.|     ||:|:             |...:.|..:..:....|...:.
  Rat   229 QDSSQMNLYKDEMQENSGSLVSLDENMQTKVRDLPPAEENTEQKPEQTVCFLGEDTVQIPTGTEA 293

  Fly   140 FSRKSSLMTHIRNHSAERKFVCTYCHKGFTQAANLRNHERIHTNDRPYQCVDCGKTFTQITNLNN 204
            ..::..|.|..:|.:..|:|.|..|.|.|.|::.|..|:||||..:||:|.:|||.|...:.|..
  Rat   294 SEQEGKLQTTQKNATGNRRFYCRECGKSFAQSSGLSKHKRIHTGLKPYECEECGKAFIGSSALII 358

  Fly   205 HRRLHTGERPFVCNEPECGRSFAQVTNLNNHMKSHHKVQQYCCNVCNKKFTQVTSLNQHLQAHAG 269
            |:|:||||:|:.|.  |||::|:..::|..|.::|...:.|.|:.|.|.|||..||.:|.:.|.|
  Rat   359 HQRVHTGEKPYECE--ECGKAFSHSSDLIKHQRTHTGEKPYECDDCGKTFTQSCSLLEHHRIHTG 421

  Fly   270 VTGYYCPRCPEKNFKLQSQLHTHMKTH------------------------GLAFP--YECDKCD 308
            ...|.|..|| |.|:..|.|..|.:||                        .:..|  |:|:.|:
  Rat   422 EKPYQCNMCP-KAFRRSSHLLRHQRTHTGDKDFFVPEPYWESQSRVESHWENIETPVSYQCNDCE 485

  Fly   309 EKFLQQAHLDQHLKMH-DEFKFKCDICPSSFNQESLLKKHVQRHVEGRYLSCPVANCAES 367
            ..|.:...|.:|.|:| .|..|:|..|...|.:.|.|.:|.:||. |:..|..|.....|
  Rat   486 RSFSRITSLIEHQKVHTGEKPFECQTCGKGFTRPSYLIQHQRRHT-GKKTSVTVTPAVHS 544

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG32772NP_001284870.1 COG5048 <124..378 CDD:227381 86/271 (32%)
C2H2 Zn finger 133..153 CDD:275368 3/19 (16%)
zf-H2C2_2 145..170 CDD:290200 9/24 (38%)
C2H2 Zn finger 161..181 CDD:275368 8/19 (42%)
zf-H2C2_2 173..198 CDD:290200 13/24 (54%)
C2H2 Zn finger 189..209 CDD:275368 8/19 (42%)
C2H2 Zn finger 217..239 CDD:275368 7/21 (33%)
zf-H2C2_2 231..256 CDD:290200 8/24 (33%)
C2H2 Zn finger 247..267 CDD:275368 9/19 (47%)
C2H2 Zn finger 275..296 CDD:275368 8/20 (40%)
C2H2 Zn finger 304..324 CDD:275368 6/19 (32%)
C2H2 Zn finger 331..351 CDD:275368 6/19 (32%)
C2H2 Zn finger 359..380 CDD:275368 2/9 (22%)
Zkscan3NP_001012053.2 SCAN 47..159 CDD:128708
KRAB_A-box 213..271 CDD:413388 10/41 (24%)
zf-C2H2 313..335 CDD:395048 9/21 (43%)
C2H2 Zn finger 315..335 CDD:275368 8/19 (42%)
zf-H2C2_2 328..350 CDD:404364 12/21 (57%)
zf-C2H2 341..363 CDD:395048 9/21 (43%)
C2H2 Zn finger 343..363 CDD:275368 8/19 (42%)
COG5048 <367..514 CDD:227381 45/149 (30%)
C2H2 Zn finger 371..391 CDD:275368 7/21 (33%)
C2H2 Zn finger 399..419 CDD:275368 9/19 (47%)
C2H2 Zn finger 427..447 CDD:275368 8/20 (40%)
C2H2 Zn finger 481..501 CDD:275368 6/19 (32%)
zf-C2H2 507..529 CDD:395048 7/21 (33%)
C2H2 Zn finger 509..529 CDD:275368 6/19 (32%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23226
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

Return to query results.
Submit another query.