DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6927 and glra4a

DIOPT Version :9

Sequence 1:NP_572194.1 Gene:CG6927 / 31419 FlyBaseID:FBgn0029733 Length:524 Species:Drosophila melanogaster
Sequence 2:XP_005169655.1 Gene:glra4a / 83413 ZFINID:ZDB-GENE-010410-3 Length:457 Species:Danio rerio


Alignment Length:491 Identity:133/491 - (27%)
Similarity:222/491 - (45%) Gaps:96/491 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 LSQTQLLDRL---THGCRYDRLERPITYSETGQRLPVDVYMRAYIYFMQNLEAHDLQFKIYALLQ 95
            :|.:..||:|   |.|  ||...||     ..:..||:|....:|....::....:.:::...|:
Zfish    42 MSPSDFLDKLMGRTSG--YDARIRP-----NFKGPPVNVTCNIFINSFGSITETTMDYRLNVFLR 99

  Fly    96 MRYLDPRLNFRNVSPKRRQPILGEEHLRNSLWMPHIFLANERDSSILGLTEKDILTSISPDGTVI 160
            .::.||||.:... |.....:  :..:.:|:|.|.:|.|||:.::...:|..:.|..|..:|.|:
Zfish   100 QQWNDPRLAYSEY-PDASLDL--DPSMLDSIWKPDLFFANEKGANFHEVTTDNKLLRIFQNGNVL 161

  Fly   161 VSNRIKATLYCWLNLKKFPFDEQHCSTVLESWMYNTSELVLHWEQKRPITYDGALHLTEFVLQRS 225
            .|.|:...|.|.::||.||.|.|.|:..|||:.|..::|:..|....|:.....|.|.:|||:. 
Zfish   162 YSIRLTLILSCPMDLKNFPMDIQTCTMQLESFGYTMNDLIFEWLSDNPVQVADDLTLPQFVLKE- 225

  Fly   226 WSNETVINADLSDLRHGAFAGNYSSLSFTVHLTRVVGFYLMDYFLPSMLIVAISWVSFWLQADQA 290
                   ..||.........|.::.:....||.|.:|:||:..::||:|||.:||||||:..|.|
Zfish   226 -------EKDLGYCTKHYNTGKFTCIEVKFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAA 283

  Fly   291 PPRITLGTSTLLTFITLASAQGKTLPKVSYIKVSEVWFLGCTIFIFGSMVEFAFVNTIWRRKKSV 355
            |.|:.||.:|:||..|.:|....:||||||:|..::|...|.:|:|.:::|:|.||.:.|:.|. 
Zfish   284 PARVGLGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAVCLLFVFAALLEYAAVNFVSRQHKE- 347

  Fly   356 PVKKLNSKHILKSTLSPNLLRRRSHARSRSFSGTAL-H--KTADTGSLGGAGFNNYLTVNLPITT 417
             ..:|..|. .:..:...|:|   .:|...|.|..| |  :|.|..::.|   ::......|:..
Zfish   348 -FIRLRKKQ-RRQRIEEELVR---ESRGFYFRGYGLGHCLQTKDGTAVEG---SSVFAPPPPVQV 404

  Fly   418 IKEGQVLDQQRTSRVVQKMDVNFVESAFGSMGSAQSTGAISAASSSQTLTNNNRTESAGHQEEID 482
            :.:|:.:.::...|                                                   
Zfish   405 LYDGEAVRKRFVDR--------------------------------------------------- 418

  Fly   483 LSGWTTLTPQEIAMWIDSRARFVFPLSFLVFNLFFW 518
                        |..||:.:|.|||||||:||:|:|
Zfish   419 ------------AKRIDTISRAVFPLSFLIFNVFYW 442

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6927NP_572194.1 LIC 3..520 CDD:273305 133/491 (27%)
Neur_chan_LBD 36..259 CDD:280998 59/225 (26%)
Neur_chan_memb 270..518 CDD:280999 68/250 (27%)
glra4aXP_005169655.1 LIC 27..445 CDD:273305 133/491 (27%)
Neur_chan_LBD 48..254 CDD:280998 60/223 (27%)
Neur_chan_memb 261..442 CDD:280999 68/252 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.910

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