DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG6927 and gabrr2a

DIOPT Version :9

Sequence 1:NP_572194.1 Gene:CG6927 / 31419 FlyBaseID:FBgn0029733 Length:524 Species:Drosophila melanogaster
Sequence 2:XP_017207163.1 Gene:gabrr2a / 751659 ZFINID:ZDB-GENE-060825-164 Length:475 Species:Danio rerio


Alignment Length:509 Identity:134/509 - (26%)
Similarity:239/509 - (46%) Gaps:80/509 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 SALDEDCPTLDDGDSLSQTQLLDRLTHGCRYDRLERPITYSETGQRLPVDVYMRAYIYFMQNLEA 83
            ::|.:..|.:.....|...|||....|    |...||   :..|..:||.|.::  :..:.::..
Zfish    43 TSLAKKPPDVTKSRRLKTEQLLKVDDH----DFTMRP---AFGGPAIPVGVDVQ--VESLDSISE 98

  Fly    84 HDLQFKIYALLQMRYLDPRLNFRNVSPKRRQPILGEEHLRNSLWMPHIFLANERDSSILGLTEKD 148
            .|:.|.:...|:..:.|.||:|.:.:.|   .:..:..|...:|:|.:|..:.:.|.|...|.::
Zfish    99 VDMDFTMTLYLRHYWKDERLSFTSSTNK---SMTFDGRLVKKIWVPDVFFVHSKRSFIHDTTTEN 160

  Fly   149 ILTSISPDGTVIVSNRIKATLYCWLNLKKFPFDEQHCSTVLESWMYNTSELVLHWEQ-KRPITYD 212
            |:..:.|||.|:.|.|:..|..|.::..:||.|.|.||..|||:.|...:|:|:|:. ...::.|
Zfish   161 IMLRVFPDGHVLYSLRVTVTAACNMDFSRFPLDSQTCSLELESYAYTDEDLMLYWKNGDESLSID 225

  Fly   213 GALHLTEFVLQRSWSNETVINADLSDLRHGAFAGNYSSLSFTVHLTRVVGFYLMDYFLPSMLIVA 277
            ..:.|::|::|:..:.        |.|...:..|.|:.|.....|.|.:.|:|:..:.|:.|:|.
Zfish   226 EKISLSQFLIQKFHTT--------SRLAFYSSTGWYNRLYINFTLRRHIFFFLLQTYFPATLMVM 282

  Fly   278 ISWVSFWLQADQAPPRITLGTSTLLTFITLASAQGKTLPKVSYIKVSEVWFLGCTIFIFGSMVEF 342
            :||||||:.....|.|::||.:|:||..|:.:....::|:|||||..:::.....:|:|.|::|:
Zfish   283 LSWVSFWIDRRAVPARVSLGITTVLTMSTIITGVNASMPRVSYIKAVDIYLWVSFVFVFLSVLEY 347

  Fly   343 AFVN---TIWRRKKSVPVKKLNSKHILKSTLSPNLLRRRSHARSRSFSGTALHKTADTGSLGGAG 404
            |.||   |:..|::    :||..:.:.:.:|....  ..||.|:....||  :..|||.||  ||
Zfish   348 AAVNYLTTVQERRE----RKLRDRAVREQSLPCTC--GMSHTRTMMLDGT--YSEADTNSL--AG 402

  Fly   405 FNNYLTVNLPITTIKEGQVLDQQRTSRVVQKMDVNFVESAFGSMGSAQSTGAISAASSSQTLTNN 469
            :.....|:        .:|:.:::...||.                      :|.:|.|   ||.
Zfish   403 YTEAPMVH--------EEVVPEKQEHMVVH----------------------LSVSSES---TNT 434

  Fly   470 NRTESAGHQEEIDLSGWTTLTPQEIAMWIDSRARFVFPLSFLVFNLFFWTFVYC 523
            .:            .|...|...:....||..:|.:||.::::|||.:|: |||
Zfish   435 KK------------KGIRALRIMQNTHAIDKYSRMIFPGAYIIFNLIYWS-VYC 475

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6927NP_572194.1 LIC 3..520 CDD:273305 131/504 (26%)
Neur_chan_LBD 36..259 CDD:280998 58/223 (26%)
Neur_chan_memb 270..518 CDD:280999 66/250 (26%)
gabrr2aXP_017207163.1 LIC 43..474 CDD:273305 131/506 (26%)
Neur_chan_LBD 60..266 CDD:280998 59/225 (26%)
Neur_chan_memb 273..471 CDD:280999 66/252 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.