DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6927 and gabrr2b

DIOPT Version :9

Sequence 1:NP_572194.1 Gene:CG6927 / 31419 FlyBaseID:FBgn0029733 Length:524 Species:Drosophila melanogaster
Sequence 2:XP_697486.2 Gene:gabrr2b / 569032 ZFINID:ZDB-GENE-041014-174 Length:464 Species:Danio rerio


Alignment Length:521 Identity:122/521 - (23%)
Similarity:221/521 - (42%) Gaps:123/521 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 GDSLSQTQLLDRLTHGCR---------YDRLERPITYSETGQRLPVDVYMRAYIYFMQNLEAHDL 86
            |..|.:..|.:..||..:         :|...||   :..|..:||.|.::  :..:.::...|:
Zfish    37 GTPLFKKMLDETKTHAVKSEHLLSVEDHDFTMRP---AFAGPAVPVGVDVQ--VESLDSISEVDM 96

  Fly    87 QFKIYALLQMRYLDPRLNFRNVSPKRRQPILGEEHLRNSLWMPHIFLANERDSSILGLTEKDILT 151
            .|.:...|:..:.|.||:|.:   |..:.:..:..|...:|:|.:|..:.:.|.|...|.::|:.
Zfish    97 DFTMTLYLRHYWKDERLSFPS---KHNKSMTFDGRLVKKIWVPDVFFVHSKRSFIHDTTTENIMI 158

  Fly   152 SISPDGTVIVSNRIKATLYCWLNLKKFPFDEQHCSTVLESWMYNTSELVLHWEQ-KRPITYDGAL 215
            .:.|||.|:.|.|:..|..|.::..:||.|.|.|:..|||:.|...:|:|:|:. ...::.|..:
Zfish   159 RVYPDGHVLYSLRVTVTSACNMDFSRFPLDTQTCTLELESYAYTDEDLMLYWKSGDESLSTDDKI 223

  Fly   216 HLTEFVLQRSWSNETVINADLSDLRHGAFAGNYSSLSFTVHLTRVVGFYLMDYFLPSMLIVAISW 280
            .|::|::|:..:.        |.|...:..|.|:.|.....|.|.:.|:|:..:.|:.|:|.:||
Zfish   224 SLSQFLIQKFHTT--------SRLAFYSSTGWYNRLYINFTLRRHIFFFLLQTYFPATLMVMLSW 280

  Fly   281 VSFWLQADQAPPRITLGTSTLLTFITLASAQGKTLPKVSYIKVSEVWFLGCTIFIFGSMVEFAFV 345
            ||||:.....|.|::||.:|:||..|:.:....::|:|||||..:::.....:|:|.|::|:|.|
Zfish   281 VSFWIDRRAVPARVSLGITTVLTMSTIITGVNASMPRVSYIKAVDIYLWVSFVFVFLSVLEYAAV 345

  Fly   346 NTIWRRKKSVPVKKLNSKHILKSTLSPNLLRRRSHARSRSFSGTALHKTADTGSLGGAGFNNYLT 410
                                                                         ||| 
Zfish   346 -------------------------------------------------------------NYL- 348

  Fly   411 VNLPITTIKEGQVLDQQRTSRV------VQKMDVNFVESAFGSMGSAQSTGAISAASSSQTLTNN 469
                 ||:.:|  .|::...:.      :..|....:..|:|...|....|......||:     
Zfish   349 -----TTVHDG--TDRKLRQKTLPGTCDISSMRTMMLNEAYGRPDSNGLAGYTQTTVSSE----- 401

  Fly   470 NRTESAGHQEEI--------DLSGWTTLTPQEIAM-----WIDSRARFVFPLSFLVFNLFFWTFV 521
               |.|..|:.|        ::.|....|.:.:.:     .||:.:|.:||.:|:.|||.:|: |
Zfish   402 ---EPAEKQDPIAVCLSIGPEVKGAKKRTLRGLRIIQNTHAIDAYSRMIFPGAFIFFNLIYWS-V 462

  Fly   522 Y 522
            |
Zfish   463 Y 463

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6927NP_572194.1 LIC 3..520 CDD:273305 120/517 (23%)
Neur_chan_LBD 36..259 CDD:280998 56/232 (24%)
Neur_chan_memb 270..518 CDD:280999 58/266 (22%)
gabrr2bXP_697486.2 LIC 55..463 CDD:273305 115/501 (23%)
Neur_chan_LBD 56..261 CDD:280998 54/220 (25%)
Neur_chan_memb 268..460 CDD:280999 58/268 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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