DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6927 and gabrp

DIOPT Version :9

Sequence 1:NP_572194.1 Gene:CG6927 / 31419 FlyBaseID:FBgn0029733 Length:524 Species:Drosophila melanogaster
Sequence 2:XP_005173350.1 Gene:gabrp / 566633 ZFINID:ZDB-GENE-081028-62 Length:464 Species:Danio rerio


Alignment Length:502 Identity:120/502 - (23%)
Similarity:216/502 - (43%) Gaps:109/502 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 SQTQ-LLDRLTHGCRYDRLERPITYSETGQRLPVDVYMRAYIYFMQNLEAHDLQFKIYALLQMRY 98
            ||.| .:.:|..|  |:|..|| .::|.    ||::.|...|..:..:...::.:.....|:.|:
Zfish    52 SQLQPTIQKLMKG--YNRYLRP-NFNEG----PVEIGMSLDIASIDAISEINMDYTATIFLRQRW 109

  Fly    99 LDPRLNFRNVSPKRRQPILGEEHLRNSLWMPHIFLANERDSSILGLTEKDILTSISPDGTVIVSN 163
            .|.||.|..     .:.:..:..|.:.||:|..|:.:.:.|.:..:|.::.|..|..:|||:.:.
Zfish   110 RDSRLIFPG-----NESLSLDGRLVSLLWIPDTFIPDSKRSFLHDVTVENRLIRIFSNGTVLYAL 169

  Fly   164 RIKATLYCWLNLKKFPFDEQHCSTVLESWMYNTSELVLHWEQKRPITYDGALHLTEFVLQRSWSN 228
            ||.||:.|.::|.|:|.|.|.|:..||||.||..::|.:|.:                     .|
Zfish   170 RITATIACNMDLTKYPMDRQECTLQLESWGYNLEDVVFYWTR---------------------GN 213

  Fly   229 ETVINADLSDLRHGAFAGNYSSLSFTVH-------------LTRVVGFYLMDYFLPSMLIVAISW 280
            ::|...|...|...:....|:|::..|:             |.|.|.|::::.::||.|:|.:||
Zfish   214 DSVKGLDTLRLAQYSVESYYTSVTKAVYETGLYPKLILHFALRRNVLFFILETYVPSTLLVVLSW 278

  Fly   281 VSFWLQADQAPPRITLGTSTLLTFITLASAQGKTLPKVS-YIKVSEVWFLGCTIFIFGSMVEFAF 344
            ||||:.....|.|..:|.:|:||..||......:||..: :||..:|:...|..||||:::|:|.
Zfish   279 VSFWISQSSVPARTCIGVTTVLTMTTLMMGARTSLPNANCFIKAIDVYLGICFTFIFGALLEYAC 343

  Fly   345 VN-TIWRRKKSVPVKKLNSKHILKSTLSPNLLRRRSHARSRSFSGTALHKTADTGSLGGAGFNNY 408
            .: ...:.:..:.|::...|...:|..:.:|:...|..:.::...|...|...|           
Zfish   344 AHFCTMQHQTIIDVQRELLKEFEESNGTTHLVSSMSPRKMKTEDSTKQEKPEQT----------- 397

  Fly   409 LTVNLPITTIKEGQVLDQQRTSRVVQKMDVNFVESAFGSMGSAQSTGAISAASSSQTLTNNNRTE 473
                   .|.:|.:.::|.:             |...|.....|.:   ..|:|..::.|.:.  
Zfish   398 -------VTCEENEAIEQTK-------------EKGCGLTTVKQMS---RRAASMMSVENPHN-- 437

  Fly   474 SAGHQEEIDLSGWTTLTPQEIAMWIDSRARFVFPLSFLVFNLFFWTF 520
                                    ||..||.:||::||:.|:|:|.:
Zfish   438 ------------------------IDRHARILFPMAFLLINIFYWLY 460

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6927NP_572194.1 LIC 3..520 CDD:273305 120/500 (24%)
Neur_chan_LBD 36..259 CDD:280998 58/236 (25%)
Neur_chan_memb 270..518 CDD:280999 57/249 (23%)
gabrpXP_005173350.1 Neur_chan_LBD 21..461 CDD:332142 120/502 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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