DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG6927 and gabrz

DIOPT Version :9

Sequence 1:NP_572194.1 Gene:CG6927 / 31419 FlyBaseID:FBgn0029733 Length:524 Species:Drosophila melanogaster
Sequence 2:NP_001108214.2 Gene:gabrz / 561738 ZFINID:ZDB-GENE-080303-26 Length:447 Species:Danio rerio


Alignment Length:549 Identity:134/549 - (24%)
Similarity:230/549 - (41%) Gaps:147/549 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 ISILLNCLYASASALDEDCPTLDDGDSLSQTQLL----DRLTHGCRYDRLERPITYSETGQRLPV 67
            :..||..|:.|         .:.||...:..::|    .:|..|  |::..||  :...|   ||
Zfish     7 VGFLLLLLFIS---------RIMDGSVANTEEILPPTIQKLMKG--YNKYLRP--FFGNG---PV 55

  Fly    68 DVYMRAYIYFMQNLEAHDLQFKIYALLQMRYLDPRLNF---RNVSPKRRQPILGEEHLRNSLWMP 129
            .|.|...|..:..:...::.:.....|:.|:.|.||.|   :::|...|        |...||:|
Zfish    56 TVGMSLDIASIDTISEINMDYTATIFLRQRWTDERLCFDGNKSLSLDGR--------LVELLWVP 112

  Fly   130 HIFLANERDSSILGLTEKDILTSISPDGTVIVSNRIKATLYCWLNLKKFPFDEQHCSTVLESWMY 194
            ..|:.:.:.|.:..:|.::.|..|.|:|||:.:.||..|:.|.::|.|:|.|.|.|...||||.|
Zfish   113 DTFIVDSKKSFLHDITVENRLIRIFPNGTVLYALRITTTVACSMDLTKYPMDRQTCMLQLESWGY 177

  Fly   195 NTSELVLHWEQ-KRPITYDGALHLTEFVLQRSWSNETVINADLSDLRHGAFAGNYSSLSFTVHLT 258
            |..::|.:|.: .:.::....|.|.::.|:..:::|:....:         .|||..|.|...|.
Zfish   178 NVKDVVFYWTRGNQSVSGLDHLQLAQYTLEDHYTSESEAVYE---------TGNYPKLIFHFKLK 233

  Fly   259 RVVGFYLMDYFLPSMLIVAISWVSFWLQADQAPPRITLGTSTLLTFITLASAQGKTLPKVS-YIK 322
            |.:.:::::.::||..:|.:||||||:.....|.||.:|.:|:||..||......:||..: :||
Zfish   234 RSILYFILETYVPSSALVVLSWVSFWISQSSVPARICIGVTTVLTMTTLMMGARTSLPNANCFIK 298

  Fly   323 VSEVWFLGCTIFIFGSMVEFAFVNTIWRRKKSVPVKKLNSKHILKSTLSPNLLRRRSHARSRSFS 387
            ..:|:...|..||||:::|:|             |....:.|      .||              
Zfish   299 AIDVYLGICFSFIFGALIEYA-------------VAHFCTLH------QPN-------------- 330

  Fly   388 GTALHKTADTGSLGGAGFNNYLTVNLPITTIKEGQVLDQQRTSRVVQKMDVNFVESAFGSMGSAQ 452
                            ..|.|:          .||.:.::..       ::|.:.::|||     
Zfish   331 ----------------AANAYM----------YGQEMQERED-------EMNGIVTSFGS----- 357

  Fly   453 STGAISAASSSQTLTN----NNRTESAGHQEEIDLSGWTTLTPQ--------------------- 492
              .|:.|....:.|:.    ||.|.|.. :|::..|     .||                     
Zfish   358 --HALRARKREEMLSRMGSVNNPTPSES-KEDVSSS-----QPQTRCTKCMSRARRIIRCLYCCK 414

  Fly   493 -EIAMWIDSRARFVFPLSFLVFNLFFWTF 520
             |...:||:.:|..|||||::.||.:||:
Zfish   415 VENPHYIDNYSRLTFPLSFVIINLLYWTY 443

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6927NP_572194.1 LIC 3..520 CDD:273305 133/547 (24%)
Neur_chan_LBD 36..259 CDD:280998 61/230 (27%)
Neur_chan_memb 270..518 CDD:280999 64/274 (23%)
gabrzNP_001108214.2 LIC 26..444 CDD:273305 128/521 (25%)
LGIC_ECD_GABAAR_pi 54..235 CDD:349805 54/197 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

Return to query results.
Submit another query.