DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6927 and gabra6b

DIOPT Version :9

Sequence 1:NP_572194.1 Gene:CG6927 / 31419 FlyBaseID:FBgn0029733 Length:524 Species:Drosophila melanogaster
Sequence 2:XP_002667403.3 Gene:gabra6b / 559693 ZFINID:ZDB-GENE-080815-1 Length:444 Species:Danio rerio


Alignment Length:543 Identity:142/543 - (26%)
Similarity:222/543 - (40%) Gaps:131/543 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MEWSLIISILLNCLYAS-ASALDEDCPT-----LDDGDSLSQTQLLDRLTHGCRYDRLER----- 54
            |.|      :..||:.| ...:..:.||     ||     :.|::||||..|  ||...|     
Zfish     1 MAW------VRTCLFLSCVGQVVANPPTETRIYLD-----NITRILDRLLDG--YDNRLRPGFGG 52

  Fly    55 PITYSETGQRLPVDVYMRAYIYFMQNLEAHDLQFKIYALLQMRYLDPRLNFRNVSPKRRQPILGE 119
            |:|..:|      |:::.::    ..:...::::.:....:..::|.||.|..       ||   
Zfish    53 PVTEVKT------DIFVTSF----GPVSDVEMEYTMDVFFRQTWIDDRLKFEG-------PI--- 97

  Fly   120 EHLR------NSLWMPHIFLANERDSSILGLTEKDILTSISPDGTVIVSNRIKATLYCWLNLKKF 178
            |.||      :.:|.|..|..|.:.|....:|..:.|..|..:||::.:.|:.....|.:.|..|
Zfish    98 EILRLNNLMVSKIWTPDTFFRNGKRSISHNMTTPNKLFRIMQNGTILYTMRLTINAECPMRLINF 162

  Fly   179 PFDEQHCSTVLESWMYNTSELVLHWEQKRPITYDGALHLTEFVLQRSWS--NETVINADLSDLRH 241
            |.|...|.....|:.|..||:|..|::       |.|...| |.|.|.|  ...:|...:|..|.
Zfish   163 PMDGHSCPLKFGSYAYPMSEIVYTWKK-------GPLFSVE-VPQESSSLLQYDLIGQTVSSERL 219

  Fly   242 GAFAGNYSSLSFTVHLTRVVGFYLMDYFLPSMLIVAISWVSFWLQADQAPPRITLGTSTLLTFIT 306
            .:..|.|..::...||.|.:||:|:..::|.::.|.::.||||:..:..|.|...|.:|:||..|
Zfish   220 KSNTGEYIVMTVYFHLQRKMGFFLIQTYIPCIMTVILAQVSFWIDKESVPARTVFGITTVLTMTT 284

  Fly   307 LASAQGKTLPKVSYIKVSEVWFLG-CTIFIFGSMVEFAFVNTIWRRKKSVPVKKLNSKHILKSTL 370
            |:.:...:||||||....: ||:. |..|:|.:::|||.||..                   |||
Zfish   285 LSISARHSLPKVSYATAMD-WFIAVCFAFVFSALIEFAAVNYF-------------------STL 329

  Fly   371 SPNL-LRRRSHARSRSFSGTALHKTADTGSLGGAGFNNYLTVNLPITTIKEGQVLDQQRTSRVVQ 434
            ..|. |||.:.||:.:.:..|   .:|     |.|..|         .:..|.||.::       
Zfish   330 QANKELRRANIARAAAAAAAA---RSD-----GEGVLN---------PLDPGGVLKKR------- 370

  Fly   435 KMDVNFVESAFGSMGSAQSTGAISAASSSQTLTNNNRTESAGHQEEIDLSGWTTLTPQEIAMWID 499
                      ..|:....:|...|..|.|..           ||:...:.....|....|   ||
Zfish   371 ----------MNSLSQRSATDRFSRPSQSDF-----------HQQGSAVPANNMLIGTSI---ID 411

  Fly   500 SRARFVFPLSFLVFNLFFWTFVY 522
            ..:|.:|||||..|||.:| .||
Zfish   412 KYSRILFPLSFGAFNLVYW-IVY 433

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6927NP_572194.1 LIC 3..520 CDD:273305 139/537 (26%)
Neur_chan_LBD 36..259 CDD:280998 59/235 (25%)
Neur_chan_memb 270..518 CDD:280999 67/249 (27%)
gabra6bXP_002667403.3 Neur_chan_LBD 32..239 CDD:280998 60/236 (25%)
LIC 33..433 CDD:273305 130/498 (26%)
Neur_chan_memb 246..430 CDD:280999 67/251 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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