Protein Alignment CG6927 and Rdl

DIOPT Version :9

• Sequence 1: NP_572194.1
• Gene: CG6927 / 31419
• FlyBaseID: FBgn0029733
• Length: 524
• Species: Drosophila melanogaster
• Sequence 2: NP_001261617.1
• Gene: Rdl / 39054
• FlyBaseID: FBgn0004244
• Length: 608
• Species: Drosophila melanogaster
• Alignment Length: 582
• Identity: 135/582 - (23%)
• Similarity: 226/582 - (38%)
• Gaps: 142/582 - (24%)

  Fly    31 GDSLSQTQLLDRLTHGCRYDRLERPITYSETGQRLPVDVYMRAYIYFMQNLEAHDLQFKIYALLQ 95
            || ::.:.:||  :....||:..|| .|...    ||:|.:..|:..:.:|....:.|.:....:
  Fly    55 GD-VNISAILD--SFSVSYDKRVRP-NYGGP----PVEVGVTMYVLSISSLSEVKMDFTLDFYFR 111

  Fly    96 MRYLDPRLNFRNVSPKRRQPILGEEHLRNSLWMPHIFLANERDSSILGLTEKDILTSISPDGTVI 160
            ..:.||||.:|. .|......:|.|.::| :|:|..|..||:.|.....|..:....:...|::.
  Fly   112 QFWTDPRLAYRK-RPGVETLSVGSEFIKN-IWVPDTFFVNEKQSYFHIATTSNEFIRVHHSGSIT 174

  Fly   161 VSNRIKATLYCWLNLKKFPFDEQHCSTVLESWMYNTSELVLHW-EQKRPITYDGALHLTEFVLQR 224
            .|.|:..|..|.:||:.||.|.|.|...:||:.|...::...| :....:.....:.|.:|.:..
  Fly   175 RSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYFWRDGLSSVGMSSEVELPQFRVLG 239

  Fly   225 SWSNETVINADLSDLRHGAFAGNYSSLSFTVHLTRVVGFYLMDYFLPSMLIVAISWVSFWLQADQ 289
            .....|.||..         .||||.|:..:...|.:|:||:..::||.|||.||||||||..:.
  Fly   240 HRQRATEINLT---------TGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNA 295

  Fly   290 APPRITLGTSTLLTFITLASAQGKTLPKVSYIKVSEVWFLGCTIFIFGSMVEFAFVNTI-----W 349
            .|.|:.||.:|:||..||.|:....|||:||:|..:|:...|.:.:|.|::|:|.|..:     .
  Fly   296 TPARVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLEYATVGYMAKRIQM 360

  Fly   350 RRKKSVPVKK--------LNSKHILKSTLSPNLLRRRSHARSRSFSGTALHKTADTGSLGGAGF- 405
            |:::.:.::|        |:..:..::..:||                     |:.|..||.|.
  Fly   361 RKQRFMAIQKIAEQKKQQLDGANQQQANPNPN---------------------ANVGGPGGVGVG 404

  Fly   406 -------------------------------NNYLTVNLPITTIKEGQV----LDQQRTSRVVQK 435
                                           :::...:.|..|:....:    :.|...:|....
  Fly   405 PGGPGGPGGGVNVGVGMGMGPEHGHGHGHHAHSHGHPHAPKQTVSNRPIGFSNIQQNVGTRGCSI 469

  Fly   436 MDVNFVESAFGSMGSAQSTGAISAASSSQTLTNNNR----------------------------- 471
            :...|.|..|    ......|.|...:.:...|..|
  Fly   470 VGPLFQEVRF----KVHDPKAHSKGGTLENTVNGGRGGPQSHGPGPGQGGGPPGGGGGGGGGGGP 530

  Fly   472 TESAGHQEEI---------------DLSGWTTLTPQEIAMWIDSRARFVFPLSFLVFNLFFW 518
            .|..|..|..               |::....:||.:    ||..:|.|||:.|:.|||.:|
  Fly   531 PEGGGDPEAAVPAHLLHPGKVKKVKDINKLLGITPSD----IDKYSRIVFPVCFVCFNLMYW 588

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG6927	NP_572194.1	LIC	3..520	CDD:273305	135/582 (23%)
		Neur_chan_LBD	36..259	CDD:280998	55/223 (25%)
		Neur_chan_memb	270..518	CDD:280999	73/340 (21%)
Rdl	NP_001261617.1	LGIC_ECD_GABAR_RDL-like	83..266	CDD:349809	47/193 (24%)
		Neur_chan_memb	274..588	CDD:397193	73/342 (21%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C45447293
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG3644
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	P	PTHR18945
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	4	3.840