DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6927 and nAChRbeta1

DIOPT Version :9

Sequence 1:NP_572194.1 Gene:CG6927 / 31419 FlyBaseID:FBgn0029733 Length:524 Species:Drosophila melanogaster
Sequence 2:NP_523927.2 Gene:nAChRbeta1 / 38545 FlyBaseID:FBgn0000038 Length:521 Species:Drosophila melanogaster


Alignment Length:559 Identity:128/559 - (22%)
Similarity:222/559 - (39%) Gaps:125/559 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 WSLIISILLNCLYASASALDEDCPTLDDGDSLSQTQLLDRLTHGCRYDRLERPITYSETGQRLPV 67
            | |:.|||:...::..||.::            :.:|:..|..|  |::|.||:      |.:..
  Fly     8 W-LLCSILVLVAFSLVSASED------------EERLVRDLFRG--YNKLIRPV------QNMTQ 51

  Fly    68 DVYMRAYIYFMQ--NLEAHDLQFKIYALLQMRYLDPRL-----NFRNVSPKRRQPILGEEHLRNS 125
            .|.:|..:.|:|  |:...:...|....|::.:.|.:|     ::..:...|..|        :.
  Fly    52 KVGVRFGLAFVQLINVNEKNQIMKSNVWLRLVWYDYQLQWDEADYGGIGVLRLPP--------DK 108

  Fly   126 LWMPHIFLANERDSSILGLTEKDILTSISPDGTVIVSNRIKATLY---CWLNLKKFPFDEQHCST 187
            :|.|.|.|.|..|.:.....:.::|  |.|.|.|:   .:...:|   |.:::..||||:|.|..
  Fly   109 VWKPDIVLFNNADGNYEVRYKSNVL--IYPTGEVL---WVPPAIYQSSCTIDVTYFPFDQQTCIM 168

  Fly   188 VLESWMYNTSELVLHWEQKRPITYDGALHLTE-FV-LQRSWSNET--------VINADLSDLRHG 242
            ...||.:|..::.|            ||:..: || |...|.:.|        .:|....|..| 
  Fly   169 KFGSWTFNGDQVSL------------ALYNNKNFVDLSDYWKSGTWDIIEVPAYLNVYEGDSNH- 220

  Fly   243 AFAGNYSSLSFTVHLTRVVGFYLMDYFLPSMLIVAISWVSFWLQADQAPPRITLGTSTLLTFITL 307
               ...:.::|.:.:.|...||.::..||::||..:..:.|:|.| :|..::|||.|.||:.:..
  Fly   221 ---PTETDITFYIIIRRKTLFYTVNLILPTVLISFLCVLVFYLPA-EAGEKVTLGISILLSLVVF 281

  Fly   308 ASAQGKTLPKVSYI-----KVSEVWFLGCTIFIFGSMVEFAFVNTIWR--RKKSVP--VKKLNSK 363
            .....|.||..|.:     |.....|:..|:.|   :|....:|..:|  |...:|  ::.: ..
  Fly   282 LLLVSKILPPTSLVLPLIAKYLLFTFIMNTVSI---LVTVIIINWNFRGPRTHRMPMYIRSI-FL 342

  Fly   364 HILKSTLSPNLLRRRSHARSR---SFSGTAL--HKTADTGSLGGAGFNNYLTVNLP--ITTIKEG 421
            |.|.:.|   .::|....|.|   ...|.::  |.....||          ...||  |:.|.  
  Fly   343 HYLPAFL---FMKRPRKTRLRWMMEMPGMSMPAHPHPSYGS----------PAELPKHISAIG-- 392

  Fly   422 QVLDQQRTSRVVQKMD-------VNFVESAFGSMGSAQSTGAISAASSSQTLT--NNNRTES--- 474
               .:|....|::..|       :|...::.|.:|........|.:|.|..|:  .:..||:   
  Fly   393 ---GKQSKMEVMELSDLHHPNCKINRKVNSGGELGLGDGCRRESESSDSILLSPEASKATEAVEF 454

  Fly   475 -AGHQEEIDLSGWTTLTPQEIAMWIDSRARFVFPLSFLV 512
             |.|....||...|....:.:||.||....::|   |:|
  Fly   455 IAEHLRNEDLYIQTREDWKYVAMVIDRLQLYIF---FIV 490

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6927NP_572194.1 LIC 3..520 CDD:273305 128/559 (23%)
Neur_chan_LBD 36..259 CDD:280998 53/242 (22%)
Neur_chan_memb 270..518 CDD:280999 65/272 (24%)
nAChRbeta1NP_523927.2 LIC 8..500 CDD:273305 128/559 (23%)
Neur_chan_LBD 28..236 CDD:280998 54/244 (22%)
Neur_chan_memb 243..498 CDD:280999 65/274 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45447281
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18945
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.030

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