DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6927 and nAChRalpha3

DIOPT Version :10

Sequence 1:NP_572194.1 Gene:CG6927 / 31419 FlyBaseID:FBgn0029733 Length:524 Species:Drosophila melanogaster
Sequence 2:NP_525079.3 Gene:nAChRalpha3 / 31767 FlyBaseID:FBgn0015519 Length:795 Species:Drosophila melanogaster


Alignment Length:575 Identity:114/575 - (19%)
Similarity:208/575 - (36%) Gaps:151/575 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MEW-SLIISILLNCLYASASALDEDCPTLDDGDSLSQTQLLDRLTHGCRYDRLERPITYSETGQR 64
            |:| .:.|.::|...:.|:|..:.|...|.| |.||            .|::|.||:.  .....
  Fly     1 MKWFQVTIDMILVLSFISSSTANPDAKRLYD-DLLS------------NYNKLVRPVV--NVTDA 50

  Fly    65 LPVDVYMRAYIYFMQNLEAHDLQFKIYALLQMRYLDPRLNFRNVSPKRRQPILGEEHLR---NSL 126
            |.|.:.::.......||:...:...::  ::..:.|.:|.:   .||...   |.|.|.   :.:
  Fly    51 LTVRIKLKLSQLIDVNLKNQIMTTNLW--VEQSWYDYKLKW---EPKEYG---GVEMLHVPSDHI 107

  Fly   127 WMPHIFLANERDSSILGLTEKDILTSISPDGTVIVSNRIK---ATLY---CWLNLKKFPFDEQHC 185
            |.|.|.|.|..|.        :...:::...|:..:.|::   ..:|   |.::::.||||||.|
  Fly   108 WRPDIVLYNNADG--------NFEVTLATKATLNYTGRVEWRPPAIYKSSCEIDVEYFPFDEQTC 164

  Fly   186 STVLESWMYNTSELVLHWEQKRPITYDG----ALHLTEFVLQRSWSNETVINADLSD-------- 238
            .....||                 ||||    ..|:.|.    :.:|...:..|||:        
  Fly   165 VMKFGSW-----------------TYDGFQVDLRHIDEL----NGTNVVEVGVDLSEFYTSVEWD 208

  Fly   239 ------LRHGAF----AGNYSSLSFTVHLTRVVGFYLMDYFLPSMLIVAISWVSFWLQADQAPPR 293
                  :|:..|    ...|..::|.:.:.|...||.::..:|.|.|..::.:.|:|.:|.. .:
  Fly   209 ILEVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNLIIPCMGISFLTILVFYLPSDSG-EK 272

  Fly   294 ITLGTSTLLTFITLASAQGKTLPKVS-----------YIKVSEVWFLGCTIFI------------ 335
            ::|..|.||:.........:.:|..|           :..:.:.:.:..|:.:            
  Fly   273 VSLSISILLSLTVFFLLLAEIIPPTSLVVPLLGKFVLFTMILDTFSICVTVLVLNIHFRSPQTHT 337

  Fly   336 FGSMVEFAFVNTIWR----RKKSVPVKKL--NSKHILKSTLS-------------PNLLRRRSHA 381
            ....|...|:|.:.|    |:...|:.::  :|:.::..|.:             |..|.|..|:
  Fly   338 MAPWVRTVFINQLPRFLVMRRPLYPISEMIKSSRRLMVRTCNGLELRDQIPPLPPPVALSRMHHS 402

  Fly   382 ---RSRSFSGTALHKT--------ADTGSLGGAG-FNNYLTVNLPIT-------TIKEGQVLDQQ 427
               .|||.|....|:.        ...|..|||. ...:|:...|.|       |.....::|.|
  Fly   403 PKTTSRSTSPHLQHRVQTYNLMDECGMGMGGGASTITGHLSSLYPPTMSTANQQTSTTSSLIDAQ 467

  Fly   428 RTSRVVQK----MDVNFVESAFGSMGSAQS-TGAISAASSSQTLTNNNRTESAGH 477
            ..::..|.    :|.....:.|..|.|..| ||...:.:.:.........:|.||
  Fly   468 YHNQYQQTGGSLLDHPLTPTKFRQMTSTSSQTGQNGSGNGNGNGGYGGHGQSGGH 522

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6927NP_572194.1 LIC 3..520 CDD:455710 113/573 (20%)
nAChRalpha3NP_525079.3 LGIC_ECD_nAChR_proto_alpha-like 25..243 CDD:349832 55/269 (20%)
Cys-loop 150..164 CDD:349832 7/13 (54%)
LGIC_TM_nAChR 242..>331 CDD:349866 15/89 (17%)
TM1 helix 242..266 CDD:349866 6/23 (26%)
TM2 helix 274..295 CDD:349866 4/20 (20%)
TM3 helix 306..328 CDD:349866 1/21 (5%)
Neur_chan_memb <683..760 CDD:460753
Blue background indicates that the domain is not in the aligned region.

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