DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6927 and Gabrr2

DIOPT Version :9

Sequence 1:NP_572194.1 Gene:CG6927 / 31419 FlyBaseID:FBgn0029733 Length:524 Species:Drosophila melanogaster
Sequence 2:XP_038965308.1 Gene:Gabrr2 / 29695 RGDID:61902 Length:491 Species:Rattus norvegicus


Alignment Length:462 Identity:112/462 - (24%)
Similarity:211/462 - (45%) Gaps:77/462 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    62 GQRLPVDVYMRAYIYFMQNLEAHDLQFKIYALLQMRYLDPRLNFRNVSPKRRQPILGEEHLRNSL 126
            |..:||.|.::  :..:.::...|:.|.:...|:..:.|.||.|.:.|   .:.:..:..|...:
  Rat   100 GPAIPVGVDVQ--VESLDSISEVDMDFTMTLYLRHYWRDERLAFPSSS---NRSMTFDGRLVKKI 159

  Fly   127 WMPHIFLANERDSSILGLTEKDILTSISPDGTVIVSNRIKATLYCWLNLKKFPFDEQHCSTVLES 191
            |:|.:|..:.:.|.....|..:|:..:.|||.|:.|.||..|..|.::...||.|.|.||..|||
  Rat   160 WVPDVFFVHSKRSFTHDTTTDNIMLRVFPDGHVLYSMRITVTAMCNMDFSHFPLDSQTCSLELES 224

  Fly   192 WMYNTSELVLHWEQ-KRPITYDGALHLTEFVLQRSWSNETVINADLSDLRHGAFAGNYSSLSFTV 255
            :.|...:|:|:|:. ...:..|..:.|::|::|:..:.        |.|...:..|.|:.|....
  Rat   225 YAYTDEDLMLYWKNGDESLKTDEKISLSQFLIQKFHTT--------SRLAFYSSTGWYNRLYINF 281

  Fly   256 HLTRVVGFYLMDYFLPSMLIVAISWVSFWLQADQAPPRITLGTSTLLTFITLASAQGKTLPKVSY 320
            .|.|.:.|:|:..:.|:.|:|.:||||||:.....|.|::||..|:||..|:.:....::|:|||
  Rat   282 TLRRHIFFFLLQTYFPATLMVMLSWVSFWIDHRAVPARVSLGIMTVLTMSTIITGVNASMPRVSY 346

  Fly   321 IKVSEVWFLGCTIFIFGSMVEFAFVN---TIWRRKKSVPVKKLNSKHILKSTLSPNLLRRRSHAR 382
            |:..:::.....:|:|.|::|:|.||   |:..:|:    :||..|.    ..:..:|    |:|
  Rat   347 IRAVDIYLWVSFVFVFLSVLEYAAVNYLTTVQEQKE----RKLRDKF----PCTCGML----HSR 399

  Fly   383 SRSFSGTALHKTADTGSLGGAGFNNYLTVNLPITTIKEGQVLDQQRTSRVVQKMDVNFVESAFGS 447
            :.:..|:  :..::..||.|...::.|.              :::|..::|..:.:|      ..
  Rat   400 TMTLDGS--YSESEANSLAGYPRSHILP--------------EEERQDKIVVHLALN------SE 442

  Fly   448 MGSAQSTGAISAASSSQTLTNNNRTESAGHQEEIDLSGWTTLTPQEIAMWIDSRARFVFPLSFLV 512
            :.|::..|.:..........|.:.                          ||..:|.:||..::|
  Rat   443 LTSSRKKGLLKGQMGLYIFQNTHA--------------------------IDKYSRLIFPAFYIV 481

  Fly   513 FNLFFWT 519
            |||.:|:
  Rat   482 FNLIYWS 488

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6927NP_572194.1 LIC 3..520 CDD:273305 112/462 (24%)
Neur_chan_LBD 36..259 CDD:280998 51/197 (26%)
Neur_chan_memb 270..518 CDD:280999 57/250 (23%)
Gabrr2XP_038965308.1 LIC 87..490 CDD:273305 112/462 (24%)
LGIC_ECD_GABAAR_rho 102..287 CDD:349806 51/197 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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