DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6927 and Gabrr1

DIOPT Version :9

Sequence 1:NP_572194.1 Gene:CG6927 / 31419 FlyBaseID:FBgn0029733 Length:524 Species:Drosophila melanogaster
Sequence 2:NP_058987.3 Gene:Gabrr1 / 29694 RGDID:61900 Length:480 Species:Rattus norvegicus


Alignment Length:494 Identity:121/494 - (24%)
Similarity:214/494 - (43%) Gaps:107/494 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 DRLERPITYSET----------------GQRLPVDVYMRAYIYFMQNLEAHDLQFKIYALLQMRY 98
            |..:.|:|.||.                |..:||.|.::  :..:.::...|:.|.:...|:..:
  Rat    67 DITKSPLTKSEQLLRIDDHDFSMRPGFGGPAIPVGVDVQ--VESLDSISEVDMDFTMTLYLRHYW 129

  Fly    99 LDPRLNF---RNVSPKRRQPILGEEHLRNSLWMPHIFLANERDSSILGLTEKDILTSISPDGTVI 160
            .|.||:|   .|:|      :..:..|...:|:|.:|..:.:.|.|...|..:::..:.|||.|:
  Rat   130 KDERLSFPSTNNLS------MTFDGRLVKKIWVPDMFFVHSKRSFIHDTTTDNVMLRVQPDGKVL 188

  Fly   161 VSNRIKATLYCWLNLKKFPFDEQHCSTVLESWMYNTSELVLHWEQ-KRPITYDGALHLTEFVLQR 224
            .|.|:..|..|.::..:||.|.|.||..:||:.|...:|:|:|:: ...:..|..:.|::|::|.
  Rat   189 YSLRVTVTAMCNMDFSRFPLDTQTCSLEIESYAYTEDDLMLYWKKGNDSLKTDERISLSQFLIQE 253

  Fly   225 SWSNETVINADLSDLRHGAFAGNYSSLSFTVHLTRVVGFYLMDYFLPSMLIVAISWVSFWLQADQ 289
            ..:.        :.|...:..|.|:.|.....|.|.:.|:|:..:.|:.|:|.:||||||:....
  Rat   254 FHTT--------TKLAFYSSTGWYNRLYINFTLRRHIFFFLLQTYFPATLMVMLSWVSFWIDRRA 310

  Fly   290 APPRITLGTSTLLTFITLASAQGKTLPKVSYIKVSEVWFLGCTIFIFGSMVEFAFVN---TIWRR 351
            .|.|:.||.:|:||..|:.:....::|:|||||..:::.....:|:|.|::|:|.||   |:..|
  Rat   311 VPARVPLGITTVLTMSTIITGVNASMPRVSYIKAVDIYLWVSFVFVFLSVLEYAAVNYLTTVQER 375

  Fly   352 KKSVPVKKLNSKHILKSTLSPNLLRRRSHARSRSFSGTALHKTADTGSLGGAGFNNYLTVNLPIT 416
            |:    :||..    |.:.:..|.:.|......|:|      ..:...|||     |:..|    
  Rat   376 KE----RKLRE----KISCTCGLPQPRGVMLDSSYS------DGEVNDLGG-----YMPEN---- 417

  Fly   417 TIKEGQVLDQQRTSRVVQKMDVNFVESAFGS-MGSAQSTGAISAASSSQTLTNNNRTESAGHQEE 480
                            .:|.|...|:....| .||.|..   |...|..::..|...        
  Rat   418 ----------------GEKPDRMMVQLTLASERGSPQRK---SQRGSYVSMRINTHA-------- 455

  Fly   481 IDLSGWTTLTPQEIAMWIDSRARFVFPLSFLVFNLFFWT 519
                             ||..:|.:||.::::|||.:|:
  Rat   456 -----------------IDKYSRIIFPAAYILFNLIYWS 477

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6927NP_572194.1 LIC 3..520 CDD:273305 121/494 (24%)
Neur_chan_LBD 36..259 CDD:280998 54/228 (24%)
Neur_chan_memb 270..518 CDD:280999 63/251 (25%)
Gabrr1NP_058987.3 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 31..67 121/494 (24%)
LIC 76..479 CDD:273305 118/485 (24%)
LGIC_ECD_GABAAR_rho 97..282 CDD:349806 49/200 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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