Protein Alignment CG6927 and Gabrd

DIOPT Version :9

• Sequence 1: NP_572194.1
• Gene: CG6927 / 31419
• FlyBaseID: FBgn0029733
• Length: 524
• Species: Drosophila melanogaster
• Sequence 2: NP_058985.1
• Gene: Gabrd / 29689
• RGDID: 61901
• Length: 449
• Species: Rattus norvegicus
• Alignment Length: 533
• Identity: 141/533 - (26%)
• Similarity: 236/533 - (44%)
• Gaps: 111/533 - (20%)

  Fly     3 WSLIISILLNCL--YASASALDEDCPTLDDGD------SLSQTQLLDRLTHGCRYDRLERPITYS 59
            | |::.:||.|.  :..|.|::      |.||      .:|....||.|..|  |.|..||....
  Rat     6 W-LLLPLLLLCTQPHHGARAMN------DIGDYVGSNLEISWLPNLDGLMEG--YARNFRPGIGG 61

  Fly    60 ETGQRLPVDVYMRAYIYFMQNLEAHDLQFKIYALLQMRYLDPRLNFRNVSPKRRQPILG-EEHLR 123
            .     ||:|.:...:..:.::...::::.:...|...:.|.||::.:.:     ..|| :....
  Rat    62 P-----PVNVALALEVASIDHISEANMEYTMTVFLHQSWRDSRLSYNHTN-----ETLGLDSRFV 116

  Fly   124 NSLWMPHIFLANERDSSILGLTEKDILTSISPDGTVIVSNRIKATLYCWLNLKKFPFDEQHCSTV 188
            :.||:|..|:.|.:.:....:|.::.|..:.|||.::.|.||.:|:.|.::|.|:|.|||.|...
  Rat   117 DKLWLPDTFIVNAKSAWFHDVTVENKLIRLQPDGVILYSIRITSTVACDMDLAKYPMDEQECMLD 181

  Fly   189 LESWMYNTSELVLHW-EQKRPITYDGALHLTEFVLQRSWSNETVINADLSDLRHGAFAGNYSSLS 252
            |||:.|::.::|.:| |.:..|.....|.|.:|.: .|:...|       :|.:...||.:..||
  Rat   182 LESYGYSSEDIVYYWSENQEQIHGLDRLQLAQFTI-TSYRFTT-------ELMNFKSAGQFPRLS 238

  Fly   253 FTVHLTRVVGFYLMDYFLPSMLIVAISWVSFWLQADQAPPRITLGTSTLLTFITLASAQGKTLPK 317
            ....|.|..|.|::..::||:|:||:||||||:.....|.|::||.:|:||..||..:...:||:
  Rat   239 LHFQLRRNRGVYIIQSYMPSVLLVAMSWVSFWISQAAVPARVSLGITTVLTMTTLMVSARSSLPR 303

  Fly   318 VSYIKVSEVWFLGCTIFIFGSMVEFAFV--NTIWRRKKSVPVKKLNSKHILKSTLSPNLLRRRSH 380
            .|.||..:|:|..|.:|:|.::||:||.  |..:|:|:...||               :.:.|:.
  Rat   304 ASAIKALDVYFWICYVFVFAALVEYAFAHFNADYRKKRKAKVK---------------VTKPRAE 353

  Fly   381 ARSRSFSGTALHKTADTGSLGGAGFNNYLTVN-----LPITTIKEGQVLDQQRTSRVVQKMDVNF 440
            ...|  :...|.      ||..||.:..|.::     :|      |.::...|:..|..|.:..
  Rat   354 MDVR--NAIVLF------SLSAAGVSQELAISRRQGRVP------GNLMGSYRSVEVEAKKEGG- 403

  Fly   441 VESAFGSMGSAQSTGAISAASSSQTLTNNNRTESAGHQEEIDLSGWTTLTPQEIAMWIDSRARFV 505
              |..|..|..:|                                  .|.|.: |..||..||.|
  Rat   404 --SRPGGPGGIRS----------------------------------RLKPID-ADTIDIYARAV 431

  Fly   506 FPLSFLVFNLFFW 518
            ||.:|...|:.:|
  Rat   432 FPAAFAAVNIIYW 444

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG6927	NP_572194.1	LIC	3..520	CDD:273305	141/533 (26%)
		Neur_chan_LBD	36..259	CDD:280998	58/224 (26%)
		Neur_chan_memb	270..518	CDD:280999	68/254 (27%)
Gabrd	NP_058985.1	LGIC_ECD	63..246	CDD:355788	50/195 (26%)
		LGIC_TM	249..>337	CDD:365787	36/87 (41%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG3644
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	2	1.900