DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6927 and lgc-43

DIOPT Version :9

Sequence 1:NP_572194.1 Gene:CG6927 / 31419 FlyBaseID:FBgn0029733 Length:524 Species:Drosophila melanogaster
Sequence 2:NP_001023062.1 Gene:lgc-43 / 259591 WormBaseID:WBGene00008076 Length:679 Species:Caenorhabditis elegans


Alignment Length:309 Identity:66/309 - (21%)
Similarity:137/309 - (44%) Gaps:24/309 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 YDRLERPITYSETGQRLPVDVYMRAYIYFMQNLEAHDLQFKIYALLQMRYLDPRL--NFRNVSPK 111
            ||....|:.:::    :||:|.:.....::.|.::..::|.:...::..::|.||  |:......
 Worm   330 YDNTSVPLAFND----IPVNVAVAFNFLYLANFDSEMMEFSMDVEMEFSWIDIRLVNNYTKPIRI 390

  Fly   112 RRQPILGEEHLRNSLWMPHIFLANERDSSILGLTEKDILTSISPDGTVIVSNRIKATLYCWLNLK 176
            |.:||:      ..:|.|..::.|.:.|....::..:|...|:|:|.|..:.|:.:...|:::..
 Worm   391 REKPII------EQIWRPDPYIVNSKHSYFHYVSFPNIRMRITPEGLVTYTVRVSSVCSCFMSFC 449

  Fly   177 KFPFDEQHCSTVLESWMYNTSELVLHWEQKRPITYDGALHLTEFVLQRSWSNETVINADLSDLRH 241
            .:|.|.|.|...:.|..|:...:..|| ...||.:...:.|.|..:.:..:.|......|.|.  
 Worm   450 LYPHDRQECDLRISSIAYSNQYVKFHW-HSNPIKFQSKITLPELHITKIKTAECSTKGKLVDA-- 511

  Fly   242 GAFAGNYSSLSFTVHLTRVVGFYLMDYFLPSMLIVAISWVSFWLQADQAPPRITLGTSTLLTFIT 306
                   |.|.....|.|....::::.::||.|.:..:||:.::..:....||....:.|||.:.
 Worm   512 -------SCLRIIFSLERDSARFVIEKYVPSTLAMMFAWVAPYVPYNYEDVRIITPITVLLTLVQ 569

  Fly   307 LASAQGKTLPKVSYIKVSEVWFLGCTIFIFGSMVEFAFVNTIWRRKKSV 355
            :  .:|....:.||:...:|||.....|...|::|...|..:.:|.:::
 Worm   570 M--EKGDKEIRTSYLTSIDVWFAAMKSFTVLSLLESLAVLALIKRSRAM 616

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6927NP_572194.1 LIC 3..520 CDD:273305 66/309 (21%)
Neur_chan_LBD 36..259 CDD:280998 44/211 (21%)
Neur_chan_memb 270..518 CDD:280999 21/86 (24%)
lgc-43NP_001023062.1 LGIC_ECD_anion 344..523 CDD:349788 40/194 (21%)
LGIC_TM 527..665 CDD:365787 21/92 (23%)
TM1 helix 527..551 CDD:349850 5/23 (22%)
TM2 helix 555..577 CDD:349850 6/23 (26%)
TM3 helix 583..609 CDD:349850 7/25 (28%)
TM4 helix 610..665 CDD:349850 1/7 (14%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.910

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