DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6927 and GABRR2

DIOPT Version :9

Sequence 1:NP_572194.1 Gene:CG6927 / 31419 FlyBaseID:FBgn0029733 Length:524 Species:Drosophila melanogaster
Sequence 2:NP_002034.3 Gene:GABRR2 / 2570 HGNCID:4091 Length:465 Species:Homo sapiens


Alignment Length:462 Identity:113/462 - (24%)
Similarity:212/462 - (45%) Gaps:77/462 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    62 GQRLPVDVYMRAYIYFMQNLEAHDLQFKIYALLQMRYLDPRLNFRNVSPKRRQPILGEEHLRNSL 126
            |..:||.|.::  :..:.::...|:.|.:...|:..:.|.||.|.:.|.|   .:..:..|...:
Human    74 GPAIPVGVDVQ--VESLDSISEVDMDFTMTLYLRHYWKDERLAFSSASNK---SMTFDGRLVKKI 133

  Fly   127 WMPHIFLANERDSSILGLTEKDILTSISPDGTVIVSNRIKATLYCWLNLKKFPFDEQHCSTVLES 191
            |:|.:|..:.:.|.....|..:|:..:.|||.|:.|.||..|..|.::...||.|.|.||..|||
Human   134 WVPDVFFVHSKRSFTHDTTTDNIMLRVFPDGHVLYSMRITVTAMCNMDFSHFPLDSQTCSLELES 198

  Fly   192 WMYNTSELVLHWEQ-KRPITYDGALHLTEFVLQRSWSNETVINADLSDLRHGAFAGNYSSLSFTV 255
            :.|...:|:|:|:. ...:..|..:.|::|::|:..:.        |.|...:..|.|:.|....
Human   199 YAYTDEDLMLYWKNGDESLKTDEKISLSQFLIQKFHTT--------SRLAFYSSTGWYNRLYINF 255

  Fly   256 HLTRVVGFYLMDYFLPSMLIVAISWVSFWLQADQAPPRITLGTSTLLTFITLASAQGKTLPKVSY 320
            .|.|.:.|:|:..:.|:.|:|.:||||||:.....|.|::||.:|:||..|:.:....::|:|||
Human   256 TLRRHIFFFLLQTYFPATLMVMLSWVSFWIDRRAVPARVSLGITTVLTMTTIITGVNASMPRVSY 320

  Fly   321 IKVSEVWFLGCTIFIFGSMVEFAFVN---TIWRRKKSVPVKKLNSKHILKSTLSPNLLRRRSHAR 382
            :|..:::.....:|:|.|::|:|.||   |:..||:    :||..|......:        .|::
Human   321 VKAVDIYLWVSFVFVFLSVLEYAAVNYLTTVQERKE----RKLREKFPCMCGM--------LHSK 373

  Fly   383 SRSFSGTALHKTADTGSLGGAGFNNYLTVNLPITTIKEGQVLDQQRTSRVVQKMDVNFVESAFGS 447
            :....|:  :..::..||.|...::.||              :::|..::|..:.::      |.
Human   374 TMMLDGS--YSESEANSLAGYPRSHILT--------------EEERQDKIVVHLGLS------GE 416

  Fly   448 MGSAQSTGAISAASSSQTLTNNNRTESAGHQEEIDLSGWTTLTPQEIAMWIDSRARFVFPLSFLV 512
            ..:|:..|.:...:..:...|.:.                          ||..:|.:||.|::.
Human   417 ANAARKKGLLKGQTGFRIFQNTHA--------------------------IDKYSRLIFPASYIF 455

  Fly   513 FNLFFWT 519
            |||.:|:
Human   456 FNLIYWS 462

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6927NP_572194.1 LIC 3..520 CDD:273305 113/462 (24%)
Neur_chan_LBD 36..259 CDD:280998 52/197 (26%)
Neur_chan_memb 270..518 CDD:280999 57/250 (23%)
GABRR2NP_002034.3 Neur_chan_LBD 51..464 CDD:332142 113/462 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

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