DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG6927 and GABRA5

DIOPT Version :9

Sequence 1:NP_572194.1 Gene:CG6927 / 31419 FlyBaseID:FBgn0029733 Length:524 Species:Drosophila melanogaster
Sequence 2:NP_000801.1 Gene:GABRA5 / 2558 HGNCID:4079 Length:462 Species:Homo sapiens


Alignment Length:536 Identity:124/536 - (23%)
Similarity:219/536 - (40%) Gaps:123/536 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 LIISILLNCLYASASAL--DEDCPTLDDGDSLSQ-----TQLLDRLTHGCRYDRLERPITYSETG 62
            :|.::||.|:..:.|:.  ....||....|..:.     |::||.|..|  ||...||    ..|
Human    11 MIKNLLLFCISMNLSSHFGFSQMPTSSVKDETNDNITIFTRILDGLLDG--YDNRLRP----GLG 69

  Fly    63 QRLP---VDVYMRAYIYFMQNLEAHDLQFKIYALLQMRYLDPRLNFRNVSPKRRQPILGEEHLRN 124
            :|:.   .|:|:.::    ..:...::::.|....:..:.|.||.|:  .|.:|.|:  ...|.:
Human    70 ERITQVRTDIYVTSF----GPVSDTEMEYTIDVFFRQSWKDERLRFK--GPMQRLPL--NNLLAS 126

  Fly   125 SLWMPHIFLANERDSSILGLTEKDILTSISPDGTVIVSNRIKATLYCWLNLKKFPFDEQHCSTVL 189
            .:|.|..|..|.:.|....:|..:.|..:..|||::.:.|:..:..|.:.|:.||.|...|....
Human   127 KIWTPDTFFHNGKKSIAHNMTTPNKLLRLEDDGTLLYTMRLTISAECPMQLEDFPMDAHACPLKF 191

  Fly   190 ESWMYNTSELVLHW---EQKRPITYDGALHLTEFVLQRSWSNETVINADLSDLRHGAFAGNYSSL 251
            .|:.|..||:|..|   ..|..:..:....|.::.|.    .:||...::|     ...|.|:.:
Human   192 GSYAYPNSEVVYVWTNGSTKSVVVAEDGSRLNQYHLM----GQTVGTENIS-----TSTGEYTIM 247

  Fly   252 SFTVHLTRVVGFYLMDYFLPSMLIVAISWVSFWLQADQAPPRITLGTSTLLTFITLASAQGKTLP 316
            :...||.|.:|::::..:||.::.|.:|.|||||..:..|.|...|.:|:||..||:.:...:||
Human   248 TAHFHLKRKIGYFVIQTYLPCIMTVILSQVSFWLNRESVPARTVFGVTTVLTMTTLSISARNSLP 312

  Fly   317 KVSYIKVSEVWFLG-CTIFIFGSMVEFAFVNTI------WRRKKSVPVKKLNSKH--ILKSTLSP 372
            ||:|....: ||:. |..|:|.:::|||.||..      |..||::...|:..|.  ||..:.:.
Human   313 KVAYATAMD-WFIAVCYAFVFSALIEFATVNYFTKRGWAWDGKKALEAAKIKKKREVILNKSTNA 376

  Fly   373 NLLRRRSHARSRSFSGTALHKTADTGSLGGAGFNNYLTVNLPITTIKEGQVLDQQRTSRVVQKMD 437
            ....:.||                             ..|:|           :::|.       
Human   377 FTTGKMSH-----------------------------PPNIP-----------KEQTP------- 394

  Fly   438 VNFVESAFGSMGSAQSTGAISAASSSQTLTNNNRTESAGHQEEIDLSGWTTLTPQEIAMWIDSRA 502
                       ....:|.::|...|.:..:.:.:|.::..:                   ||..:
Human   395 -----------AGTSNTTSVSVKPSEEKTSESKKTYNSISK-------------------IDKMS 429

  Fly   503 RFVFPLSFLVFNLFFW 518
            |.|||:.|..|||.:|
Human   430 RIVFPVLFGTFNLVYW 445

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6927NP_572194.1 LIC 3..520 CDD:273305 124/536 (23%)
Neur_chan_LBD 36..259 CDD:280998 55/233 (24%)
Neur_chan_memb 270..518 CDD:280999 58/256 (23%)
GABRA5NP_000801.1 LGIC_ECD_GABAAR_A5 58..256 CDD:349839 51/220 (23%)
LGIC_TM_GABAAR_alpha 259..445 CDD:349854 58/263 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 377..412 8/92 (9%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.