DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6927 and GABRA4

DIOPT Version :9

Sequence 1:NP_572194.1 Gene:CG6927 / 31419 FlyBaseID:FBgn0029733 Length:524 Species:Drosophila melanogaster
Sequence 2:NP_000800.2 Gene:GABRA4 / 2557 HGNCID:4078 Length:554 Species:Homo sapiens


Alignment Length:569 Identity:134/569 - (23%)
Similarity:233/569 - (40%) Gaps:159/569 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 TQLLDRLTHGCRYDRLER-----PITYSETGQRLPVDVYMRAYIYFMQNLEAHDLQFKIYALLQM 96
            |::||.|..|  ||...|     |:|..:|      |:|:.::    ..:...::::.:....:.
Human    49 TRILDSLLDG--YDNRLRPGFGGPVTEVKT------DIYVTSF----GPVSDVEMEYTMDVFFRQ 101

  Fly    97 RYLDPRLNFRNVSPKRRQPILGEEHLR------NSLWMPHIFLANERDSSILGLTEKDILTSISP 155
            .::|.||.:..       ||   |.||      ..:|.|..|..|.:.|....:|..:.|..|..
Human   102 TWIDKRLKYDG-------PI---EILRLNNMMVTKVWTPDTFFRNGKKSVSHNMTAPNKLFRIMR 156

  Fly   156 DGTVIVSNRIKATLYCWLNLKKFPFDEQHCSTVLESWMYNTSELVLHW------------EQKRP 208
            :||::.:.|:..:..|.:.|..||.|...|.....|:.|..||::..|            |....
Human   157 NGTILYTMRLTISAECPMRLVDFPMDGHACPLKFGSYAYPKSEMIYTWTKGPEKSVEVPKESSSL 221

  Fly   209 ITYDGALHLTEFVLQRSWSNETVINADLSDLRHGAFAGNYSSLSFTVHLTRVVGFYLMDYFLPSM 273
            :.||        ::.::.|:||:          .:..|.|..::...||.|.:|::::..::|.:
Human   222 VQYD--------LIGQTVSSETI----------KSITGEYIVMTVYFHLRRKMGYFMIQTYIPCI 268

  Fly   274 LIVAISWVSFWLQADQAPPRITLGTSTLLTFITLASAQGKTLPKVSYIKVSEVWFLG-CTIFIFG 337
            :.|.:|.||||:..:..|.|...|.:|:||..||:.:...:||||||....: ||:. |..|:|.
Human   269 MTVILSQVSFWINKESVPARTVFGITTVLTMTTLSISARHSLPKVSYATAMD-WFIAVCFAFVFS 332

  Fly   338 SMVEFAFVNTIW-------RRKKSVPVKKL------NSKH---ILKSTLSPNLLRRRSHARSRSF 386
            :::|||.||...       :||.|.|.:::      ..||   .|::|.:...:|:|::|     
Human   333 ALIEFAAVNYFTNIQMEKAKRKTSKPPQEVPAAPVQREKHPEAPLQNTNANLNMRKRTNA----- 392

  Fly   387 SGTALHKTADTGSLGGAGFNNYLTVNLPITTIKEGQVLDQQRTSRVVQKMDVNFVESAFGSMGS- 450
               .:|..:|.|:....|.::                   .::|.|||       ||:.|:..| 
Human   393 ---LVHSESDVGNRTEVGNHS-------------------SKSSTVVQ-------ESSKGTPRSY 428

  Fly   451 -AQSTGAISAASSSQTLTNNNRTESA-------GHQ--------------------------EEI 481
             |.|....|.|::::|::......||       |:.                          ..|
Human   429 LASSPNPFSRANAAETISAARALPSASPTSIRTGYMPRKASVGSASTRHVFGSRLQRIKTTVNTI 493

  Fly   482 DLSGWTTLTPQEIA--------MWIDSRARFVFPLSFLVFNLFFWTFVY 522
            ..:|..:.||...|        ..||..||.:||::|..||:.:|. ||
Human   494 GATGKLSATPPPSAPPPSGSGTSKIDKYARILFPVTFGAFNMVYWV-VY 541

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6927NP_572194.1 LIC 3..520 CDD:273305 132/565 (23%)
Neur_chan_LBD 36..259 CDD:280998 53/244 (22%)
Neur_chan_memb 270..518 CDD:280999 76/307 (25%)
GABRA4NP_000800.2 Neur_chan_LBD 13..541 CDD:332142 132/567 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 350..381 7/30 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 397..435 13/63 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 452..471 3/18 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 495..515 4/19 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

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