DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG6927 and lgc-52

DIOPT Version :9

Sequence 1:NP_572194.1 Gene:CG6927 / 31419 FlyBaseID:FBgn0029733 Length:524 Species:Drosophila melanogaster
Sequence 2:NP_502839.3 Gene:lgc-52 / 190669 WormBaseID:WBGene00013517 Length:423 Species:Caenorhabditis elegans


Alignment Length:529 Identity:131/529 - (24%)
Similarity:205/529 - (38%) Gaps:135/529 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 IISILLNCLYASASALD------EDCPTLDDG-DSLSQTQLLD----RLTHGCRYDRLERPITYS 59
            |.::.:..:..||...|      ||....|.| .|||..:..|    .:|:   |.|...|    
 Worm     5 IQALFIETILMSARIHDVTYQHIEDFTCDDIGLSSLSGAKATDLARILMTN---YSRNALP---- 62

  Fly    60 ETGQRLPVDVYMRAYIYFMQNLEAHDLQFKIYALLQMRYLDPRLNFRNVSPKRRQPILGEEH-LR 123
               :..||.|.:...|..:.::.|....|.|...:...:.|.||.|.::.|.|:.  |..:| :.
 Worm    63 ---EPAPVKVEVEITIQDISDISAITGTFTIDYWISAIWNDKRLAFSHLDPCRKN--LSLDHDME 122

  Fly   124 NSLWMPHIFLANERDSSILGLTEKDILTSISPDGTVIVSNRIKATLYCWLNLKKFPFDEQHCSTV 188
            ..||.|::.:.|.:.:.:....:.:||..|.|:||:.::.||::...|.:||:.||.|...||.|
 Worm   123 PKLWSPNVCIVNSKSTKVHDSPKPNILLMIFPNGTIWLNYRIRSEAPCQMNLRNFPLDSIRCSLV 187

  Fly   189 LESWMYNTSELVLHWEQKRPI-TYDGALHLTEFVLQRSWSNETVINADLSDLRHGAFAGNYSSLS 252
            .||:.||.:::.|.|.:..|: |.....:|.:|         .:.|.....:.....||.:..||
 Worm   188 FESYSYNAADVELQWLEWSPVSTVRNDYNLPDF---------RMTNITYGSVTEAYTAGMWHRLS 243

  Fly   253 FTVHLTRVVGFYLMDYFLPSMLIVAISWVSFWLQADQAPPRITLGTSTLLTFITLASAQGKTLPK 317
            .::|..|:.|||::..:||:.:.|.|||::||:.....|.||||..|:|:..........|:|||
 Worm   244 VSIHFERLYGFYILQMYLPTYISVFISWIAFWMDTKALPARITLSVSSLMALTFQFGNIVKSLPK 308

  Fly   318 VSYIKVSEVWFLGCTIFIFGSMVEFAFVNTIWRRKKSVPVKKLNSKHILKSTLSPNLLRRRSHAR 382
            .||:|..::|...|..|||.|::|.|.|             ..|.|      :....||      
 Worm   309 ASYVKAIDIWMFSCVGFIFFSLIELAIV-------------AYNDK------MHDQRLR------ 348

  Fly   383 SRSFSGTALHKTADTGSLGGAGFNNYLTVNLPITTIKEGQVLDQQRTSRVVQKMDVNFVE-SAFG 446
                     ......|:|...|...|                 ...|.|       :||| ||..
 Worm   349 ---------EVRCSVGNLNSNGIGQY-----------------NSTTRR-------SFVELSARR 380

  Fly   447 SMGSAQSTGAISAASSSQTLTNNNRTESAGHQEEIDLSGWTTLTPQEIAMWIDSRARFVFPLSFL 511
            :.||                                          |:...||..|..:||..|.
 Worm   381 AKGS------------------------------------------ELGASIDRVASMLFPTMFA 403

  Fly   512 VFNLFFWTF 520
            :|||.:|.:
 Worm   404 LFNLVYWAY 412

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6927NP_572194.1 LIC 3..520 CDD:273305 131/527 (25%)
Neur_chan_LBD 36..259 CDD:280998 57/228 (25%)
Neur_chan_memb 270..518 CDD:280999 58/248 (23%)
lgc-52NP_502839.3 Neur_chan_LBD 45..248 CDD:280998 56/223 (25%)
LIC 52..413 CDD:273305 119/482 (25%)
Neur_chan_memb 259..>338 CDD:280999 31/91 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1260459at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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