DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6927 and Gabrg1

DIOPT Version :9

Sequence 1:NP_572194.1 Gene:CG6927 / 31419 FlyBaseID:FBgn0029733 Length:524 Species:Drosophila melanogaster
Sequence 2:NP_034382.2 Gene:Gabrg1 / 14405 MGIID:103156 Length:465 Species:Mus musculus


Alignment Length:545 Identity:133/545 - (24%)
Similarity:227/545 - (41%) Gaps:120/545 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 WS---------LIISILL-NCLYASASALDED---------CPTLDDGDSLSQTQLLDRLTHGCR 48
            ||         |::::.| ||:..:....|||         .|.:.:||.   ||:|:.|..|  
Mouse    15 WSQTRGVRLIFLLLTLHLGNCVDKADDEDDEDLTMNKTWVLAPKIHEGDI---TQILNSLLQG-- 74

  Fly    49 YDRLERPITYSETGQRLPVDVYMRAYIYFMQNLEAHDLQFKIYALLQMRYLDPRLNFRNVSPKRR 113
            ||...||    :.|.| |..:....|:..:..::..::::.|..:....:.|.||.|.:.    .
Mouse    75 YDNKLRP----DIGVR-PTVIETDVYVNSIGPVDPINMEYTIDIIFAQTWFDSRLKFNST----M 130

  Fly   114 QPILGEEHLRNSLWMPHIFLANERDSSILGLTEKDILTSISPDGTVIVSNRIKATLYCWLNLKKF 178
            :.::...::...:|:|..|..|.|.|....:|..:.|..|..||.|:.:.|:.....|:|.|..|
Mouse   131 KVLMLNSNMVGKIWIPDTFFRNSRKSDAHWITTPNRLLRIWSDGRVLYTLRLTINAECYLQLHNF 195

  Fly   179 PFDEQHCSTVLESWMYNTSELVLHWEQKRPITYD---GALHLTEFVLQRSWSNETVINADLSDLR 240
            |.||..|.....|:.|..:|:...|::......|   ..|:...||..|   |.|.|:..:|   
Mouse   196 PMDEHSCPLEFSSYGYPKNEIEYKWKKPSVEVADPKYWRLYQFAFVGLR---NSTEISHTIS--- 254

  Fly   241 HGAFAGNYSSLSFTVHLTRVVGFYLMDYFLPSMLIVAISWVSFWLQADQAPPRITLGTSTLLTFI 305
                 |:|..::....|:|.:|::.:..::|.:|.|.:||||||:..|..|.|.:||.:|:||..
Mouse   255 -----GDYIIMTIFFDLSRRMGYFTIQTYIPCILTVVLSWVSFWINKDAVPARTSLGITTVLTMT 314

  Fly   306 TLASAQGKTLPKVSYIKVSEVWFLGCTIFIFGSMVEFAFVN--TIWRRKKSVPVKKLNSKHILKS 368
            ||::...|:||||||:...:::...|.||:|.:::|:..::  |...:.|:...:||.:    |:
Mouse   315 TLSTIARKSLPKVSYVTAMDLFVSVCFIFVFAALMEYGTLHYFTSNNKGKTTRGRKLKN----KT 375

  Fly   369 TLSPNLLRRRSHARSRSFSGTALHKTADTGSLGGAGFNNYLTVNLPITTIKEGQVLDQQRTSRVV 433
            :.||.|     ||      |:.|                     :|:.:|...|..|        
Mouse   376 SASPGL-----HA------GSTL---------------------IPMNSISLPQGED-------- 400

  Fly   434 QKMDVNFVESAFGSMGSAQSTGAISAASSSQTLTNNNRTESAGHQEEIDLSGWTTLTPQEIAMWI 498
               |..:                       |.|...:.|......::.....|...........|
Mouse   401 ---DYGY-----------------------QCLEGKDCTSFFCCFDDCRTGSWREGRIHIRIAKI 439

  Fly   499 DSRARFVFPLSFLVFNLFFWT-FVY 522
            ||.:|..||.:|.:|||.:|. ::|
Mouse   440 DSYSRIFFPTAFALFNLVYWVGYLY 464

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6927NP_572194.1 LIC 3..520 CDD:273305 132/541 (24%)
Neur_chan_LBD 36..259 CDD:280998 55/225 (24%)
Neur_chan_memb 270..518 CDD:280999 62/249 (25%)
Gabrg1NP_034382.2 Neur_chan_LBD 65..270 CDD:280998 56/226 (25%)
LIC 66..462 CDD:273305 119/487 (24%)
Neur_chan_memb 277..459 CDD:280999 62/251 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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