DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6927 and Gabrb2

DIOPT Version :9

Sequence 1:NP_572194.1 Gene:CG6927 / 31419 FlyBaseID:FBgn0029733 Length:524 Species:Drosophila melanogaster
Sequence 2:NP_001334243.1 Gene:Gabrb2 / 14401 MGIID:95620 Length:512 Species:Mus musculus


Alignment Length:554 Identity:139/554 - (25%)
Similarity:250/554 - (45%) Gaps:93/554 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 WSLIISILLNCLYASASALDEDCPTLDDGDSLSQT-QLLDRLTHGCRYDRLERPITYSETGQRLP 66
            ||..:.|...|           ..:::|..::|.. :.:|||..|  ||...||    :.|.. |
Mouse    13 WSFPLIIAAVC-----------AQSVNDPSNMSLVKETVDRLLKG--YDIRLRP----DFGGP-P 59

  Fly    67 VDVYMRAYIYFMQNLEAHDLQFKIYALLQMRYLDPRLNFRNVSPKRRQPILGEEHLRNSLWMPHI 131
            |.|.|...|..:..:...::.:.:....|..:.|.||:: ||.|..   :..:..:.:.||:|..
Mouse    60 VAVGMNIDIASIDMVSEVNMDYTLTMYFQQAWRDKRLSY-NVIPLN---LTLDNRVADQLWVPDT 120

  Fly   132 FLANERDSSILGLTEKDILTSISPDGTVIVSNRIKATLYCWLNLKKFPFDEQHCSTVLESWMYNT 196
            :..|::.|.:.|:|.|:.:..:.|||||:...||..|..|.::|:::|.|||:|:..:||:.|.|
Mouse   121 YFLNDKKSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTT 185

  Fly   197 SELVLHWE-QKRPITYDGALHLTEFVLQRSWSNETVINADLSDLRHGAFAGNYSSLSFTVHLTRV 260
            .::..:|. ....:|....:.|.:|         ::::..|...:.....|:|..||.:..|.|.
Mouse   186 DDIEFYWRGDDNAVTGVTKIELPQF---------SIVDYKLITKKVVFSTGSYPRLSLSFKLKRN 241

  Fly   261 VGFYLMDYFLPSMLIVAISWVSFWLQADQAPPRITLGTSTLLTFITLASAQGKTLPKVSYIKVSE 325
            :|::::..::||:||..:||||||:..|.:..|:.||.:|:||..|:.:...:||||:.|:|..:
Mouse   242 IGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKIPYVKAID 306

  Fly   326 VWFLGCTIFIFGSMVEFAFVNTIW-----RRKKSVPVKKLNSKHILKSTLSPNLLRRRSHARSRS 385
            ::.:||.:|:|.:::|:|.||.|:     :|:|....|..|:.: .|..|..|    :...:...
Mouse   307 MYLMGCFVFVFMALLEYALVNYIFFGRGPQRQKKAAEKAANANN-EKMRLDVN----KMFYKDIK 366

  Fly   386 FSGTALHKTAD-TGSLG------GAGFNNYLT---VNLPITTIKEGQVLDQQRTSRVVQKMDVNF 440
            .:||......| ||.|.      ...|:.|..   .|:.::|:   ::.::..||..|.      
Mouse   367 QNGTQYRSLWDPTGDLSPTRRTTNYDFSLYTMDPHENILLSTL---EIKNEMATSEAVM------ 422

  Fly   441 VESAFGSMGSAQSTGAISAASSSQ-------------------TLTNNNRTESAGHQEEIDLSGW 486
                  .:|..:||.....|||.|                   .....:|......|.:|.:...
Mouse   423 ------GLGDPRSTMLAYDASSIQYRKAGLPRHSFGRNALERHVAQKKSRLRRRASQLKITIPDL 481

  Fly   487 TTLTPQEIAMWIDSRARFVFPLSFLVFNLFFWTF 520
            |.:..      ||..:|..||:.|..||:.:|.:
Mouse   482 TDVNA------IDRWSRIFFPVVFSFFNIVYWLY 509

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6927NP_572194.1 LIC 3..520 CDD:273305 139/552 (25%)
Neur_chan_LBD 36..259 CDD:280998 58/224 (26%)
Neur_chan_memb 270..518 CDD:280999 72/281 (26%)
Gabrb2NP_001334243.1 LIC 9..510 CDD:273305 139/554 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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