DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG6927 and Gabra5

DIOPT Version :9

Sequence 1:NP_572194.1 Gene:CG6927 / 31419 FlyBaseID:FBgn0029733 Length:524 Species:Drosophila melanogaster
Sequence 2:NP_001349090.1 Gene:Gabra5 / 110886 MGIID:95617 Length:463 Species:Mus musculus


Alignment Length:510 Identity:122/510 - (23%)
Similarity:202/510 - (39%) Gaps:141/510 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 TQLLDRLTHGCRYDRLERPITYSETGQRLP---VDVYMRAYIYFMQNLEAHDLQFKIYALLQMRY 98
            |::||.|..|  ||...||    ..|:|:.   .|:|:.::    ..:...::::.|....:..:
Mouse    50 TRILDGLLDG--YDNRLRP----GLGERITQVRTDIYVTSF----GPVSDTEMEYTIDVFFRQSW 104

  Fly    99 LDPRLNFRNVSPKRRQPILGEEHLRNSLWMPHIFLANERDSSILGLTEKDILTSISPDGTVIVSN 163
            .|.||.|:  .|.:|.|:  ...|.:.:|.|..|..|.:.|....:|..:.|..:..|||::.:.
Mouse   105 KDERLRFK--GPMQRLPL--NNLLASKIWTPDTFFHNGKKSIAHNMTTPNKLLRLEDDGTLLYTM 165

  Fly   164 RIKATLYCWLNLKKFPFDEQHCSTVLESWMYNTSELVLHW---EQKRPITYDGALHLTEFVLQRS 225
            |:..:..|.:.|:.||.|...|.....|:.|..||:|..|   ..|..:..:....|.::.|.  
Mouse   166 RLTISAECPMQLEDFPMDAHACPLKFGSYAYPNSEVVYVWTNGSTKSVVVAEDGSRLNQYHLM-- 228

  Fly   226 WSNETVINADLSDLRHGAFAGNYSSLSFTVHLTRVVGFYLMDYFLPSMLIVAISWVSFWLQADQA 290
              .:||...::|     ...|.|:.::...||.|.:|::::..:||.::.|.:|.|||||..:..
Mouse   229 --GQTVGTENIS-----TSTGEYTIMTAHFHLKRKIGYFVIQTYLPCIMTVILSQVSFWLNRESV 286

  Fly   291 PPRITLGTSTLLTFITLASAQGKTLPKVSYIKVSEVWFLG-CTIFIFGSMVEFAFVNTI------ 348
            |.|...|.:|:||..||:.:...:||||:|....: ||:. |..|:|.:::|||.||..      
Mouse   287 PARTVFGVTTVLTMTTLSISARNSLPKVAYATAMD-WFIAVCYAFVFSALIEFATVNYFTKRGWA 350

  Fly   349 WRRKKSVPVKKLNSKH---IL----------KSTLSPNLLRRRSHARSRSFSGTALHKTADTGSL 400
            |..||::...|:..|.   ||          |.|..||:.:.:..|      |||          
Mouse   351 WDGKKALEAAKIKKKERELILNKSTNAFTTGKLTHPPNIPKEQPPA------GTA---------- 399

  Fly   401 GGAGFNNYLTVNLPITTIK--EGQVLDQQRTSRVVQKMDVNFVESAFGSMGSAQSTGAISAASSS 463
                       |.|..:||  |.:..:.::|...:.|                            
Mouse   400 -----------NAPTVSIKASEEKTAESKKTYNSISK---------------------------- 425

  Fly   464 QTLTNNNRTESAGHQEEIDLSGWTTLTPQEIAMWIDSRARFVFPLSFLVFNLFFW 518
                                              ||..:|.|||:.|..|||.:|
Mouse   426 ----------------------------------IDKMSRIVFPILFGTFNLVYW 446

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6927NP_572194.1 LIC 3..520 CDD:273305 122/510 (24%)
Neur_chan_LBD 36..259 CDD:280998 55/227 (24%)
Neur_chan_memb 270..518 CDD:280999 64/269 (24%)
Gabra5NP_001349090.1 LIC 15..449 CDD:273305 122/510 (24%)
LGIC_ECD_GABAAR_A5 58..256 CDD:349839 51/220 (23%)
Cys-loop 173..187 CDD:349839 5/13 (38%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 387..408 9/47 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

Return to query results.
Submit another query.