DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6927 and gabra2a

DIOPT Version :9

Sequence 1:NP_572194.1 Gene:CG6927 / 31419 FlyBaseID:FBgn0029733 Length:524 Species:Drosophila melanogaster
Sequence 2:XP_009305482.1 Gene:gabra2a / 100150704 ZFINID:ZDB-GENE-141216-16 Length:451 Species:Danio rerio


Alignment Length:497 Identity:114/497 - (22%)
Similarity:205/497 - (41%) Gaps:120/497 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 TQLLDRLTHGCRYDRLERPITYSETGQR---LPVDVYMRAYIYFMQNLEAHDLQFKIYALLQMRY 98
            |::||||..|  ||...||    ..|.|   :..|:|:.::    ..:...|:::.:....:.|:
Zfish    43 TRILDRLLDG--YDNRLRP----GLGDRVTEVKTDIYVTSF----GPVSDTDMEYTVDVFFRQRW 97

  Fly    99 LDPRLNFRNVSPKRRQPILGEEHLRNS-LWMPHIFLANERDSSILGLTEKDILTSISPDGTVIVS 162
            .|.||.|.  .|..   ||...:|..| :|.|..|..|.:.|....:|..:.|..|..:||::.:
Zfish    98 TDERLKFH--GPMN---ILRLNNLMASKIWTPDTFFHNGKKSVAHNMTMPNKLLRIMENGTLLYT 157

  Fly   163 NRIKATLYCWLNLKKFPFDEQHCSTVLESWMYNTSELVLHWEQKRPITY----DGALHLTEF-VL 222
            .|:.....|.::|:.||.|...|.....|:.|..:|:...|.:...::.    ||: .|.:: ::
Zfish   158 MRLTVQAECPMHLEDFPMDFHSCPLKFGSYAYTLTEVTYVWTRNATLSVEVAPDGS-RLNQYDLM 221

  Fly   223 QRSWSNETVINADLSDLRHGAFAGNYSSLSFTVHLTRVVGFYLMDYFLPSMLIVAISWVSFWLQA 287
            .::...||:.::          .|.|:.::...||.|.:|::::..:||.::.|.:|.|||||..
Zfish   222 GQTVGKETIKSS----------TGEYTVMTAHFHLKRKIGYFVIQTYLPCIMTVILSQVSFWLNR 276

  Fly   288 DQAPPRITLGTSTLLTFITLASAQGKTLPKVSYIKVSEVWFLG-CTIFIFGSMVEFAFVNTIWRR 351
            :..|.|...|.:|:||..||:.:...:||||:|....: ||:. |..|:|.:::|||.||...:|
Zfish   277 ESVPARTVFGVTTVLTMTTLSISARNSLPKVAYATAMD-WFIAVCYAFVFSALIEFATVNYFTKR 340

  Fly   352 -----KKSVPVKKLNSKHILKSTLSPNLLRRRSHARSRSFSGTALHKTADTGSLGGAGFNNYLTV 411
                 .||:...|.....::|          :::|.:.:.:..|.|...|:.             
Zfish   341 GWAWDGKSIVNDKKKETSVMK----------KNNAYAVAVANYAPHIAKDSA------------- 382

  Fly   412 NLPITTIKEGQVLDQQRTSRVVQKMDVNFVESAFGSMGSAQSTGAISAASSSQTLTNNNRTESAG 476
             ||  |:.:....:..:...|.::     .:..|.|:..                          
Zfish   383 -LP--TVSKSATPEPSKAQPVAKE-----TKKTFNSVSK-------------------------- 413

  Fly   477 HQEEIDLSGWTTLTPQEIAMWIDSRARFVFPLSFLVFNLFFW 518
                                 ||..:|.:||:.|..|||.:|
Zfish   414 ---------------------IDRMSRIIFPVLFGSFNLVYW 434

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6927NP_572194.1 LIC 3..520 CDD:273305 114/497 (23%)
Neur_chan_LBD 36..259 CDD:280998 55/230 (24%)
Neur_chan_memb 270..518 CDD:280999 56/253 (22%)
gabra2aXP_009305482.1 LIC 17..437 CDD:273305 114/497 (23%)
Neur_chan_LBD 43..250 CDD:280998 56/232 (24%)
Neur_chan_memb 257..434 CDD:280999 56/255 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.900

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