DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG15471 and Lysmd3

DIOPT Version :9

Sequence 1:NP_001138156.1 Gene:CG15471 / 31412 FlyBaseID:FBgn0029726 Length:128 Species:Drosophila melanogaster
Sequence 2:NP_001009698.1 Gene:Lysmd3 / 315923 RGDID:1308805 Length:300 Species:Rattus norvegicus


Alignment Length:90 Identity:21/90 - (23%)
Similarity:40/90 - (44%) Gaps:12/90 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 DTMTRLALKYDTSIGRICRANRMHSQDVLQARRHVWVPIPNSQFQMGCQEKSESDESPEISIRKV 96
            ||:..:||:|..::..|.|.|.:.|.....|.|.:.:|:  .:|      .|.::....:..|:|
  Rat    73 DTLNAVALQYCCTVADIKRVNNLISDQDFFALRSIKIPV--KRF------SSLTETLHPLKGRQV 129

  Fly    97 TPNLPSHFYRQSDPNPNPFACDDDP 121
            ....|..::::.|..|    .:|.|
  Rat   130 LHPPPVPYFQEQDTVP----ANDSP 150

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG15471NP_001138156.1 LysM 26..69 CDD:279777 11/36 (31%)
Lysmd3NP_001009698.1 LysM 69..109 CDD:197609 11/35 (31%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 136..157 4/19 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 253..300
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2850
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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