DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Proc-R and sprr-1

DIOPT Version :9

Sequence 1:NP_001014723.1 Gene:Proc-R / 31408 FlyBaseID:FBgn0029723 Length:545 Species:Drosophila melanogaster
Sequence 2:NP_510555.2 Gene:sprr-1 / 3564903 WormBaseID:WBGene00010986 Length:527 Species:Caenorhabditis elegans


Alignment Length:548 Identity:108/548 - (19%)
Similarity:182/548 - (33%) Gaps:240/548 - (43%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 LVPCVFVIGLLGNSVSIYVLTRKRMRCTTNIYLTALAITD-IAYLTCQLILSLQHYDYPKYHFKL 109
            ::|.:..:.:..||..:.||:.|.:|..||..|.|:|:|: :..|:|     |..:.|       
 Worm    35 MMPFIVTLTVATNSFIVVVLSHKYLRTPTNYVLLAMAVTELLTGLSC-----LPWFTY------- 87

  Fly   110 YWQLYGY---------FVWLCDSFGY-----------ISIYIAVCFTIERFIAIRYPLKRQTFCT 154
            |:.|.||         ..| ||...|           ::|::.|...|:|:|.|..|...:.|||
 Worm    88 YYTLSGYKNDLQTGLPSFW-CDMIPYMAAFLPSIFHTMAIWLTVYLAIQRYIYICVPSLVRKFCT 151

  Fly   155 ESLAKKVIAAVAIFCLLSTLSTAFEHTITIGTRQIDDAYQPCNQTVANISPMPPPPVAVTPPLAT 219
            ...:|:|     ||.::|.                                              
 Worm   152 IHRSKQV-----IFFIISV---------------------------------------------- 165

  Fly   220 PPLPTPATIWQSPDSAMESTTSGSSNQLVDWGSGSGDGEPENIPRHRRHWQSSGFVTLPTLRKTL 284
                  |||..:||             |:.:.:.|.|                            
 Worm   166 ------ATIMYTPD-------------LMAFHNKSHD---------------------------- 183

  Fly   285 EEQDQKVADAAQRSGVTESLLQLWRRKRSAENHNINNTDAFAFNVTEYCQNVTYYNHG---LSEL 346
                  |.|:              :|.|:                .:.|     |.|.   :.:|
 Worm   184 ------VFDS--------------KRNRT----------------MKLC-----YRHRAPFMLKL 207

  Fly   347 GYDELYSYLWNLFTLLVFVVFPLLLLATFNSILILLV----HRSKNLRGDLTNASSIRRTKRKSN 407
            |.|..|..::...|:.|.:: |.:||..|...|:..:    .|..||   |:..|:..|:.|:..
 Worm   208 GDDIYYKVMFTTQTVAVHLI-PSVLLVIFTWKLVGAIRVADRRHANL---LSKYSTTTRSTRRKF 268

  Fly   408 SGLKGSVSQENRV-------------------------TITLIAVVLMFIVCQLPWAIYLIVN-- 445
            |.|..|...||::                         |..|:.|:|:|::.::|.|:...::  
 Worm   269 SELTNSSENENKITRLFKQRDSVSVGNEPRRAHGLKQNTRMLVVVILLFLITEIPAALIFTIHVL 333

  Fly   446 -----------QYMEIQIGTQVVAGNVCNLLASLHAASNFFLYCVLSDKYRKTVRELITGYRYRR 499
                       |::.|.:       .|.|:|..:.....|.:||.:|.::|..||::.||...  
 Worm   334 SVSLKFSFVDYQFLNILL-------IVRNVLIVVSYPFRFAIYCGMSQQFRDVVRQMFTGKML-- 389

  Fly   500 RHA---RNNTSLYVPHTTTTLTQINGDH 524
            .||   ::|:      ||..|.|...||
 Worm   390 THAIRDKDNS------TTMQLVQGVTDH 411

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Proc-RNP_001014723.1 7tm_4 52..>183 CDD:304433 39/151 (26%)
sprr-1NP_510555.2 7tmA_FMRFamide_R-like 30..380 CDD:320109 95/507 (19%)
TM helix 1 32..56 CDD:320109 5/20 (25%)
TM helix 2 64..86 CDD:320109 8/26 (31%)
TM helix 3 112..134 CDD:320109 3/21 (14%)
TM helix 4 157..175 CDD:320109 9/87 (10%)
TM helix 5 214..237 CDD:320109 6/23 (26%)
TM helix 6 279..329 CDD:320109 8/49 (16%)
TM helix 7 348..373 CDD:320109 7/31 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D421120at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

Return to query results.
Submit another query.