DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pdha and pda1

DIOPT Version :9

Sequence 1:NP_726945.1 Gene:Pdha / 31406 FlyBaseID:FBgn0028325 Length:443 Species:Drosophila melanogaster
Sequence 2:NP_594892.1 Gene:pda1 / 2541579 PomBaseID:SPAC26F1.03 Length:409 Species:Schizosaccharomyces pombe


Alignment Length:447 Identity:197/447 - (44%)
Similarity:264/447 - (59%) Gaps:59/447 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MLRTLSRVSELPIIVKQLQKRCHNNNNNNIIISGCRILSNNNNNSSIDIIRNGRYSSSFFGLFQN 65
            |.||.:::..:|                       ::|.|..                  ||...
pombe     1 MFRTCTKIGTVP-----------------------KVLVNQK------------------GLIDG 24

  Fly    66 AAQAGVSKTNNYATEATV--QVNRPFKLHRLDEG---------PATEVKLTKDQALKYYTQMQTI 119
            ..:.....|.:.|..|.|  :.::||.: :||:.         |:||:::||.:.|..|.:|.||
pombe    25 LRRVTTDATTSRANPAHVPEEHDKPFPV-KLDDSVFEGYKIDVPSTEIEVTKGELLGLYEKMVTI 88

  Fly   120 RRLETAAGNLYKEKIIRGFCHLYSGQEACAVGMKAAMRDVDNIISAYRVHGWTYLMGVSPSGVLA 184
            ||||.|...|||.|.|||||||..||||.|.|::.|:...|:||::||.||:.|..|:|...::.
pombe    89 RRLELACDALYKAKKIRGFCHLSIGQEAVAAGIEGAITLDDSIITSYRCHGFAYTRGLSIRSIIG 153

  Fly   185 ELTGVQGGCARGKGGSMHMYAPNFYGGNGIVGAQVPLGAGVGLACKYKGNGGMCLALYGDGAANQ 249
            ||.|.|.|.::|||||||::|.||||||||||||:|||||:|.|.||........|||||||:||
pombe   154 ELMGRQCGASKGKGGSMHIFAKNFYGGNGIVGAQIPLGAGIGFAQKYLEKPTTTFALYGDGASNQ 218

  Fly   250 GQVFEAYNMAYLWKLPVIFVCENNNYGMGTSSERASCNTDYYTRGDALPGIWVDGMDVLAVRSAT 314
            ||.|||:|||.||.|||||.||||.||||||:||:|..|::|.||..:||:.|:|||||||..|:
pombe   219 GQAFEAFNMAKLWGLPVIFACENNKYGMGTSAERSSAMTEFYKRGQYIPGLLVNGMDVLAVLQAS 283

  Fly   315 EFAINY-VNTHGPLVMETNTYRYSGHSMSDPGTSYRTREEIQEVRQKRDPITSFKELCIELGLIT 378
            :||..| |....||:||..||||.|||||||||:||:|||:|:||..||||...|:..:|.|:..
pombe   284 KFAKKYTVENSQPLLMEFVTYRYGGHSMSDPGTTYRSREEVQKVRAARDPIEGLKKHIMEWGVAN 348

  Fly   379 TDEVKAIDLKVRKEVDEATAFAKSD--AELGVSHLWTDVYSNNLEP---KLRGTIAY 430
            .:|:|.|:.::|..|||....|:..  .:.....|::|||....||   :.|.::.|
pombe   349 ANELKNIEKRIRGMVDEEVRIAEESPFPDPIEESLFSDVYVAGTEPAYARGRNSLEY 405

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PdhaNP_726945.1 TPP_enzymes 78..426 CDD:294952 186/364 (51%)
pda1NP_594892.1 TPP_enzymes 51..406 CDD:294952 183/356 (51%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 331 1.000 Domainoid score I208
eggNOG 1 0.900 - - E1_COG0462
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 351 1.000 Inparanoid score I481
OMA 1 1.010 - - QHG54057
OrthoFinder 1 1.000 - - FOG0001471
OrthoInspector 1 1.000 - - otm47031
orthoMCL 1 0.900 - - OOG6_100754
Panther 1 1.100 - - O PTHR11516
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2211
SonicParanoid 1 1.000 - - X926
TreeFam 1 0.960 - -
1312.860

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