DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pdha and Pdha1

DIOPT Version :9

Sequence 1:NP_726945.1 Gene:Pdha / 31406 FlyBaseID:FBgn0028325 Length:443 Species:Drosophila melanogaster
Sequence 2:NP_032836.1 Gene:Pdha1 / 18597 MGIID:97532 Length:390 Species:Mus musculus


Alignment Length:367 Identity:214/367 - (58%)
Similarity:269/367 - (73%) Gaps:2/367 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    61 GLFQNAAQAGVSKTNNYATEATVQVNRPFKLHRLDEGPATEVKLTKDQALKYYTQMQTIRRLETA 125
            |..|..|...:..:.|:|.:||.::.: ..||||:|||.....||::..||||..|||:||:|..
Mouse    14 GSAQKPASRVLVASRNFANDATFEIKK-CDLHRLEEGPPVTTVLTREDGLKYYRMMQTVRRMELK 77

  Fly   126 AGNLYKEKIIRGFCHLYSGQEACAVGMKAAMRDVDNIISAYRVHGWTYLMGVSPSGVLAELTGVQ 190
            |..|||:|||||||||..|||||.||::|.:...|::|:|||.||:|:..|:....:||||||.:
Mouse    78 ADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLITAYRAHGFTFTRGLPVRAILAELTGRR 142

  Fly   191 GGCARGKGGSMHMYAPNFYGGNGIVGAQVPLGAGVGLACKYKGNGGMCLALYGDGAANQGQVFEA 255
            ||||:||||||||||.||||||||||||||||||:.|||||.|...:||.|||||||||||:|||
Mouse   143 GGCAKGKGGSMHMYAKNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEA 207

  Fly   256 YNMAYLWKLPVIFVCENNNYGMGTSSERASCNTDYYTRGDALPGIWVDGMDVLAVRSATEFAINY 320
            ||||.|||||.||:||||.||||||.|||:.:||||.|||.:||:.|||||:|.||.||:||..|
Mouse   208 YNMAALWKLPCIFICENNRYGMGTSVERAAASTDYYKRGDFIPGLRVDGMDILCVREATKFAAAY 272

  Fly   321 VNT-HGPLVMETNTYRYSGHSMSDPGTSYRTREEIQEVRQKRDPITSFKELCIELGLITTDEVKA 384
            ..: .||::||..||||.||||||||.||||||||||||.|.|||...|:..:...|.:.:|:|.
Mouse   273 CRSGKGPILMELQTYRYHGHSMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKE 337

  Fly   385 IDLKVRKEVDEATAFAKSDAELGVSHLWTDVYSNNLEPKLRG 426
            ||::||||:::|..||.:|.|..:..|...:||::...::||
Mouse   338 IDVEVRKEIEDAAQFATADPEPPLEELGYHIYSSDPPFEVRG 379

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PdhaNP_726945.1 TPP_enzymes 78..426 CDD:294952 208/348 (60%)
Pdha1NP_032836.1 PDH_E1_alph_y 58..370 CDD:274473 194/311 (62%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167834076
Domainoid 1 1.000 403 1.000 Domainoid score I726
eggNOG 1 0.900 - - E1_COG0462
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 444 1.000 Inparanoid score I1627
Isobase 1 0.950 - 0 Normalized mean entropy S510
OMA 1 1.010 - - QHG54057
OrthoDB 1 1.010 - - D318981at33208
OrthoFinder 1 1.000 - - FOG0001471
OrthoInspector 1 1.000 - - otm43434
orthoMCL 1 0.900 - - OOG6_100754
Panther 1 1.100 - - O PTHR11516
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2211
SonicParanoid 1 1.000 - - X926
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1615.750

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