DRSC/TRiP Functional Genomics Resources

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Protein Alignment ctp and AT4G27360

DIOPT Version :9

Sequence 1:NP_001356933.1 Gene:ctp / 31405 FlyBaseID:FBgn0011760 Length:267 Species:Drosophila melanogaster
Sequence 2:NP_194466.2 Gene:AT4G27360 / 828844 AraportID:AT4G27360 Length:103 Species:Arabidopsis thaliana


Alignment Length:89 Identity:41/89 - (46%)
Similarity:63/89 - (70%) Gaps:2/89 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEK--DIAAYIKKEFDKKYNPTWHCIVGRNFG 63
            |.:.|||:.:.||.:.|::||:..|::||:.:::.:  .||.:||||||:.|...|.||||.:||
plant     1 MLEGKAVMGDTDMKQTMKEDALSLASKALDCFDVTEPTQIARFIKKEFDRSYGSGWQCIVGTHFG 65

  Fly    64 SYVTHETRHFIYFYLGQVAILLFK 87
            |:|||.:..||:|.:|.:.|||||
plant    66 SFVTHCSGCFIHFSVGSLTILLFK 89

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ctpNP_001356933.1 PTZ00059 1..89 CDD:185421 41/89 (46%)
AT4G27360NP_194466.2 Dynein_light 5..89 CDD:279552 38/83 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3430
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1520814at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11886
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.920

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