DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG3009 and Pla2g2c

DIOPT Version :9

Sequence 1:NP_001162665.1 Gene:CG3009 / 31402 FlyBaseID:FBgn0029720 Length:342 Species:Drosophila melanogaster
Sequence 2:NP_062075.1 Gene:Pla2g2c / 29387 RGDID:3340 Length:158 Species:Rattus norvegicus


Alignment Length:117 Identity:26/117 - (22%)
Similarity:36/117 - (30%) Gaps:36/117 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   109 WCGPGTAATSYDDLGAHAREDRCCREHDM---------CPDVLNVGE-----------CRRG--- 150
            :||.|......|      ..||||..||.         |..:||..:           |..|   
  Rat    55 YCGLGGRGIPVD------ATDRCCWAHDCCYHKLKEYGCQPILNAYQFAIVNGTVTCGCTMGGGC 113

  Fly   151 LCNRGTFTRSHCDCDARFRRCLQAANTETANTLGAIFYNVVQVTCFQERSPC 202
            ||.     :..|:||.....|.:........|...:|....|  |.:::..|
  Rat   114 LCG-----QKACECDKLSVYCFKENLATYEKTFKQLFPTRPQ--CGRDKLHC 158

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3009NP_001162665.1 PLA2_bee_venom_like 102..198 CDD:153093 25/111 (23%)
Pla2g2cNP_062075.1 PA2c 29..148 CDD:214508 23/103 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1422829at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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