DRSC/TRiP Functional Genomics Resources

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Protein Alignment HLH4C and Msgn1

DIOPT Version :9

Sequence 1:NP_001259243.1 Gene:HLH4C / 31397 FlyBaseID:FBgn0011277 Length:191 Species:Drosophila melanogaster
Sequence 2:NP_062417.1 Gene:Msgn1 / 56184 MGIID:1860483 Length:188 Species:Mus musculus


Alignment Length:152 Identity:34/152 - (22%)
Similarity:56/152 - (36%) Gaps:37/152 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    51 DKRFQAR---MACETAAQPAPPPPPTPAPRRRTTPIAH---------------------LDPSEL 91
            |.:.:||   :..|:..|...|.|...:......|..|                     ||.|.|
Mouse    28 DWKSRARPLELVQESPTQSLSPAPSLESYSEVALPCGHSGASTGGSDGYGSHEAAGLVELDYSML 92

  Fly    92 V----------GLSREERRRRRRATLKYRTAHATRERIRVEAFNVSFAELRKLLPTLPPDK--KL 144
            .          ||..::..:.:.:..:.|.| :.||::|:.....:...||..||.:...:  .|
Mouse    93 AFQPPYLHTAGGLKGQKGSKVKMSVQRRRKA-SEREKLRMRTLADALHTLRNYLPPVYSQRGQPL 156

  Fly   145 SKIEILKLAICYIAYLNHVLET 166
            :||:.||..|.||..|..:|.:
Mouse   157 TKIQTLKYTIKYIGELTDLLNS 178

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HLH4CNP_001259243.1 HLH 108..165 CDD:238036 18/58 (31%)
Msgn1NP_062417.1 HLH 119..173 CDD:278439 17/54 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4029
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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