DRSC/TRiP Functional Genomics Resources

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Protein Alignment HLH4C and Atoh1

DIOPT Version :10

Sequence 1:NP_001259243.1 Gene:HLH4C / 31397 FlyBaseID:FBgn0011277 Length:191 Species:Drosophila melanogaster
Sequence 2:NP_001102708.1 Gene:Atoh1 / 500156 RGDID:1565171 Length:351 Species:Rattus norvegicus


Alignment Length:114 Identity:36/114 - (31%)
Similarity:55/114 - (48%) Gaps:6/114 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    73 TPAPRRRTTPIAHLDPSELV---GLSREERRRRRRAT---LKYRTAHATRERIRVEAFNVSFAEL 131
            :|.|.:....:..|....:|   |.||:.....::..   .:.|.|...|||.|:...|.:|.:|
  Rat   115 SPGPVKVREQLCKLKGGVVVDELGCSRQRAPSSKQVNGVQKQRRLAANARERRRMHGLNHAFDQL 179

  Fly   132 RKLLPTLPPDKKLSKIEILKLAICYIAYLNHVLETPXDSAGASSFATSC 180
            |.::|:...||||||.|.|::|..||..|:.:|:||.........|.||
  Rat   180 RNVIPSFNNDKKLSKYETLQMAQIYINALSELLQTPSVGEQPPPPAASC 228

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HLH4CNP_001259243.1 bHLH_TS_HEN1 105..165 CDD:381544 23/62 (37%)
Atoh1NP_001102708.1 bHLH_TS_ATOH1 152..215 CDD:381556 24/62 (39%)

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