DRSC/TRiP Functional Genomics Resources

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Protein Alignment HLH4C and twist1

DIOPT Version :10

Sequence 1:NP_001259243.1 Gene:HLH4C / 31397 FlyBaseID:FBgn0011277 Length:191 Species:Drosophila melanogaster
Sequence 2:NP_989415.1 Gene:twist1 / 395054 XenbaseID:XB-GENE-479802 Length:166 Species:Xenopus tropicalis


Alignment Length:153 Identity:48/153 - (31%)
Similarity:69/153 - (45%) Gaps:23/153 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 DEMIGPNNPHLVNEDYAASTTLDIDKRFQARMAC----ETAAQPAPPPPPTPAPRRRTTPIAHLD 87
            :|...|.:|    .|..:::..::|::...| .|    .|...|..|..|....|.:.:......
 Frog     4 EESSSPVSP----VDSLSNSEEELDRQHSKR-GCRKKRSTRKSPEDPDSPISVKRNKKSSSTGSS 63

  Fly    88 PSELVGLSREERRRRRRATLKYRTAHATRERIRVEAFNVSFAELRKLLPTLPPDKKLSKIEILKL 152
            |.....|..:            |.....|||.|.::.|.:||.|||::||||.| |||||:.|||
 Frog    64 PQSFEELQSQ------------RVMANVRERQRTQSLNEAFAALRKIIPTLPSD-KLSKIQTLKL 115

  Fly   153 AICYIAYLNHVLET-PXDSAGAS 174
            |..||.:|..||:: ..||..||
 Frog   116 ASRYIDFLCQVLQSDELDSKMAS 138

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HLH4CNP_001259243.1 bHLH_TS_HEN1 105..165 CDD:381544 29/59 (49%)
twist1NP_989415.1 bHLH_SF 67..138 CDD:469605 33/83 (40%)

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