Protein Alignment HLH4C and Msc

DIOPT Version :10

• Sequence 1: NP_001259243.1
• Gene: HLH4C / 31397
• FlyBaseID: FBgn0011277
• Length: 191
• Species: Drosophila melanogaster
• Sequence 2: XP_038965669.1
• Gene: Msc / 312897
• RGDID: 1305496
• Length: 220
• Species: Rattus norvegicus
• Alignment Length: 143
• Identity: 38/143 - (26%)
• Similarity: 56/143 - (39%)
• Gaps: 48/143 - (33%)

  Fly    66 PAPPPPPTPAPRRRTTPIAHLDPSE----------------LVGLSREERRRRRRAT-------- 106
            ||...||...|.|     ::..||:                .||.:...:|:|.|..
  Rat    24 PASKRPPLLRPER-----SYASPSDNSSAEEEDPDGEEEPGTVGAAGGCKRKRPRGADASGAGGG 83

  Fly   107 -------------------LKYRTAHATRERIRVEAFNVSFAELRKLLPTLPPDKKLSKIEILKL 152
                               ...|.|...|||.|:...:.:|:.|:..||.:|||.||||::.|:|
  Rat    84 AGSTGKKALPPKGSAAECKQSQRNAANARERARMRVLSKAFSRLKTSLPWVPPDTKLSKLDTLRL 148

  Fly   153 AICYIAYLNHVLE 165
            |..|||:|..:|:
  Rat   149 ASSYIAHLRQLLQ 161

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
HLH4C	NP_001259243.1	bHLH_TS_HEN1	105..165	CDD:381544	24/86 (28%)
Msc	XP_038965669.1	bHLH_TS_musculin	102..167	CDD:381546	25/60 (42%)