DRSC/TRiP Functional Genomics Resources

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Protein Alignment HLH4C and Mesp1

DIOPT Version :10

Sequence 1:NP_001259243.1 Gene:HLH4C / 31397 FlyBaseID:FBgn0011277 Length:191 Species:Drosophila melanogaster
Sequence 2:NP_001101001.1 Gene:Mesp1 / 308766 RGDID:1311751 Length:242 Species:Rattus norvegicus


Alignment Length:125 Identity:39/125 - (31%)
Similarity:52/125 - (41%) Gaps:28/125 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    64 AQPAPPPPPTPAPRRRT-TPIAHLDPSELVGLSREERRRRRRAT------LKYRTAHATRERIRV 121
            ||.:.|..|...|.||. ||                   .||.|      ...|.:.:.||::|:
  Rat    44 AQASSPALPCARPARRAGTP-------------------GRRGTHGSRLGSGQRQSASEREKLRM 89

  Fly   122 EAFNVSFAELRKLLP--TLPPDKKLSKIEILKLAICYIAYLNHVLETPXDSAGASSFATS 179
            .....:..|||:.||  ..|..:.|:|||.|:|||.||.:|:.||....||......|.|
  Rat    90 RTLARALHELRRFLPPSVAPIGQNLTKIETLRLAIRYIGHLSAVLGLSEDSLRQQRHAVS 149

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HLH4CNP_001259243.1 bHLH_TS_HEN1 105..165 CDD:381544 23/67 (34%)
Mesp1NP_001101001.1 bHLH_SF 77..141 CDD:469605 24/63 (38%)

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