DRSC/TRiP Functional Genomics Resources

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Protein Alignment HLH4C and Lyl1

DIOPT Version :10

Sequence 1:NP_001259243.1 Gene:HLH4C / 31397 FlyBaseID:FBgn0011277 Length:191 Species:Drosophila melanogaster
Sequence 2:NP_001007678.1 Gene:Lyl1 / 304663 RGDID:1359244 Length:278 Species:Rattus norvegicus


Alignment Length:189 Identity:51/189 - (26%)
Similarity:69/189 - (36%) Gaps:79/189 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly    55 QARMACETAAQPAPP-----PPPTPA---PRRRT--------TPIAHLDPSELVG--LSREERRR 101
            :..|.|.::..||||     |.|.||   ..|.|        .|:.:|..:...|  :...|...
  Rat    17 KTEMVCTSSPAPAPPSKPASPGPLPAEEVDHRNTCNPWLPPGVPVINLGHTRPTGAAMPTTELSA 81

  Fly   102 RR-----------------------------------------RATLKYRTAHA----------- 114
            .|                                         .:.||.|.:|.           
  Rat    82 FRPSLLQLAALGTAPPTLALHYHPHPFLNSVYIGPAGPFSIFPNSRLKRRPSHGELDLVDGHQPQ 146

  Fly   115 ---------TRERIRVEAFNVSFAELRKLLPTLPPDKKLSKIEILKLAICYIAYLNHVL 164
                     :|||.|.:..|.:||||||||||.|||:||||.|:|:||:.||.:|..:|
  Rat   147 KVARRVFTNSRERWRQQHVNGAFAELRKLLPTHPPDRKLSKNEVLRLAMKYIGFLVRLL 205

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HLH4CNP_001259243.1 bHLH_TS_HEN1 105..165 CDD:381544 34/80 (43%)
Lyl1NP_001007678.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..52 12/34 (35%)
bHLH_TS_LYL1 145..209 CDD:381548 30/61 (49%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 213..278
Blue background indicates that the domain is not in the aligned region.

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