DRSC/TRiP Functional Genomics Resources

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Protein Alignment HLH4C and Mesp2

DIOPT Version :9

Sequence 1:NP_001259243.1 Gene:HLH4C / 31397 FlyBaseID:FBgn0011277 Length:191 Species:Drosophila melanogaster
Sequence 2:NP_001099743.1 Gene:Mesp2 / 293046 RGDID:1305959 Length:368 Species:Rattus norvegicus


Alignment Length:131 Identity:38/131 - (29%)
Similarity:57/131 - (43%) Gaps:19/131 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    59 ACETAAQPAPPPPPTPAPRRRTTPIAHLDPSELVGLSREERRRRRRATLKYRTAHATRERIRVEA 123
            :|...|...|.....||...|.|.:|...|          ||.|.......|.:.:.||::|:..
  Rat    42 SCPCYATRPPSQSTGPARSARNTQVAPNAP----------RRARPAPAGGQRQSASEREKLRMRT 96

  Fly   124 FNVSFAELRKLLP--TLPPDKKLSKIEILKLAICYIAYLNHVLETPXDS-------AGASSFATS 179
            ...:..|||:.||  ..|..:.|:|||.|:|||.||.:|:.:|... ||       :..::|:..
  Rat    97 LARALQELRRFLPPSVAPAGQSLTKIETLRLAIRYIGHLSALLGLSEDSLRRRRRRSADAAFSHR 161

  Fly   180 C 180
            |
  Rat   162 C 162

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HLH4CNP_001259243.1 HLH 108..165 CDD:238036 21/58 (36%)
Mesp2NP_001099743.1 HLH 82..135 CDD:278439 20/52 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4029
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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